Contrasting evolutionary dynamics and information content of the avian mitochondrial control region and ND2 gene. (Q34447095)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23071562%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

title

Contrasting evolutionary dynamics and information content of the avian mitochondrial control region and ND2 gene (English)

1 reference

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15 February 2020

1 reference

Evolutionary dynamics

1 reference

inferred from title

author

Frederick Keith Barker

1

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15 February 2020

Scott M. Lanyon

4

1 reference

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15 February 2020

author name string

Mariah K Benesh

2

1 reference

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15 February 2020

Arion J Vandergon

3

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15 February 2020

language of work or name

English

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publication date

5 October 2012

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15 February 2020

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15 February 2020

volume

7

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15 February 2020

page(s)

e46403

1 reference

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15 February 2020

issue

10

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Creative Commons Attribution 4.0 International

15 February 2020

copyright license

start time

5 October 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Amphibian DNA shows marked genetic structure and tracks pleistocene climate change in northeastern Brazil

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Selective neutrality of mitochondrial ND2 sequences, phylogeography and species limits in Sitta europaea

6 July 2018

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Phylogeographic population structure of Red-winged Blackbirds assessed by mitochondrial DNA

6 July 2018

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6 July 2018

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6 July 2018

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The role of selection in the evolution of human mitochondrial genomes

6 July 2018

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An unusual source of apparent mitochondrial heteroplasmy: duplicate mitochondrial control regions in Thalassarche albatrosses

6 July 2018

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Evolutionary history, population genetics, and gene flow in the common rosefinch (Carpodacus erythrinus).

6 July 2018

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The effect of selection on genealogies

6 July 2018

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6 July 2018

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Effects of purifying and adaptive selection on regional variation in human mtDNA.

6 July 2018

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DnaSP, DNA polymorphism analyses by the coalescent and other methods

6 July 2018

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Speciation in North American black basses, Micropterus (Actinopterygii: Centrarchidae).

6 July 2018

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Demographic expansion of parasitic nematodes of livestock based on mitochondrial DNA regions that conflict with the infinite-sites model

6 July 2018

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Natural selection shaped regional mtDNA variation in humans

6 July 2018

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6 July 2018

1 reference

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Duplication and concerted evolution of the mitochondrial control region in the parrot genus Amazona

6 July 2018

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Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies

6 July 2018

1 reference

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Heteroplasmy in the mtDNA control region of sturgeon (Acipenser, Huso and Scaphirhynchus)

6 July 2018

1 reference

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The effects of rate variation on ancestral inference in the coalescent.

6 July 2018

1 reference

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Hypervariable sites in the mtDNA control region are mutational hotspots

6 July 2018

1 reference

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Substitution rate variation among sites in mitochondrial hypervariable region I of humans and chimpanzees

6 July 2018

1 reference

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Pattern of nucleotide substitution and rate heterogeneity in the hypervariable regions I and II of human mtDNA

6 July 2018

1 reference

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Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA

6 July 2018

1 reference

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Population dynamics of HIV-1 inferred from gene sequences.

6 July 2018

1 reference

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MODELTEST: testing the model of DNA substitution

6 July 2018

1 reference

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Multiple independent origins of mitochondrial gene order in birds

6 July 2018

1 reference

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Maximum likelihood estimation of population growth rates based on the coalescent

6 July 2018

1 reference

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Estimation of the amount of DNA polymorphism when the neutral mutation rate varies among sites

6 July 2018

1 reference

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PAML: a program package for phylogenetic analysis by maximum likelihood

6 July 2018

1 reference

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Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection

6 July 2018

1 reference

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Structural conservation and variation in the mitochondrial control region of fringilline finches (Fringilla spp.) and the greenfinch (Carduelis chloris).

6 July 2018

1 reference

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Gene rearrangements in snake mitochondrial genomes: highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster.

6 July 2018

1 reference

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The genetical archaeology of the human genome

6 July 2018

1 reference

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The amount of DNA polymorphism maintained in a finite population when the neutral mutation rate varies among sites

6 July 2018

1 reference

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Using CLUSTAL for multiple sequence alignments

6 July 2018

1 reference

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The impact of population expansion and mutation rate heterogeneity on DNA sequence polymorphism.

6 July 2018

1 reference

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Molecular phylogenetics and biogeography of tanagers in the genus Ramphocelus (Aves)

6 July 2018

1 reference

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Properties of statistical tests of neutrality for DNA polymorphism data

6 July 2018

1 reference

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Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees

6 July 2018

1 reference

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Simple methods for testing the molecular evolutionary clock hypothesis.

6 July 2018

1 reference

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Nonneutral evolution at the mitochondrial NADH dehydrogenase subunit 3 gene in mice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

The number of segregating sites in expanding human populations, with implications for estimates of demographic parameters

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Evolutionary trees from DNA sequences: A maximum likelihood approach

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

A new method for calculating evolutionary substitution rates

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Human mitochondrial DNA variation and evolution: analysis of nucleotide sequences from seven individuals

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

DNA polymorphism detectable by restriction endonucleases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

6 July 2018

1 reference

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A test of neutral molecular evolution based on nucleotide data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Calibration of mitochondrial DNA evolution in geese.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Branching pattern in the evolutionary tree for human mitochondrial DNA.

6 July 2018

1 reference

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Time of the deepest root for polymorphism in human mitochondrial DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

African Populations and the Evolution of Human Mitochondrial DNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

On the number of segregating sites in genetical models without recombination

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

GENETIC EVIDENCE FOR A PLEISTOCENE POPULATION EXPLOSION.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

THE INFLUENCE OF MATING SYSTEM AND OVERLAPPING GENERATIONS ON EFFECTIVE POPULATION SIZE.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Confidence Limits on Phylogenies: an Approach using the Bootstrap

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Investigation of heteroplasmy in the human mitochondrial DNA control region: a synthesis of observations from more than 5000 global population samples

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Comparing evolutionary patterns and variability in the mitochondrial control region and cytochrome B in three species of baleen whales

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Rapid concerted evolution in animal mitochondrial DNA.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Natural selection on mitochondrial DNA in Parus and its relevance for phylogeographic studies.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

RDP2: recombination detection and analysis from sequence alignments.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

A broad survey of recombination in animal mitochondria.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Molecular architecture and rates of DNA substitutions of the mitochondrial control region of cracid birds.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Evolution of the mitochondrial DNA control region and cytochrome b genes and the inference of phylogenetic relationships in the avian genus Lophura (Galliformes).

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Dynamics and phylogenetic implications of MtDNA control region sequences in New World Jays (Aves: Corvidae).

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Substitution rate variation among sites in hypervariable region 1 of human mitochondrial DNA.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Mixed model analysis of DNA sequence evolution.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3465326

Genetic variability maintained in a finite population due to mutational production of neutral and nearly neutral isoalleles

27 October 2018

1 reference

12 December 2020

Evolution of duplicate control regions in the mitochondrial genomes of metazoa: a case study with Australasian Ixodes ticks

1 reference

12 December 2020

Structure and evolution of the avian mitochondrial control region

1 reference

12 December 2020

Current versus historical population sizes in vertebrate species with high gene flow: a comparison based on mitochondrial DNA lineages and inbreeding theory for neutral mutations

1 reference

12 December 2020

DISTANCE METHODS FOR INFERRING PHYLOGENIES: A JUSTIFICATION

1 reference

12 December 2020

Geographic analysis of nucleotide diversity and song sparrow (Aves: Emberizidae) population history

1 reference

12 December 2020

African Haplogroup L mtDNA sequences show violations of clock-like evolution

1 reference

12 December 2020

Primers for amplification and determination of mitochondrial control-region sequences in oscine passerines

1 reference

12 December 2020

Some adaptations of marsh-nesting blackbirds

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12 December 2020

Slow rate of evolution in the mitochondrial control region of gulls (Aves: Laridae)

1 reference

12 December 2020

Bird Mitochondrial Gene Order: Insight from 3 Warbler Mitochondrial Genomes

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0046403

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23071562%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

0 references

release_54ea5w3wk5cx3ah7pbfs46nq64

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/54ea5w3wk5cx3ah7pbfs46nq64

24 November 2022

mapped directly with Wikidata item

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23071562%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23071562%20AND%20SRC:MED&resulttype=core&format=json