Ubiquitin dynamics in complexes reveal molecular recognition mechanisms beyond induced fit and conformational selection (Q34440603)

2 August 2017

Ubiquitin dynamics in complexes reveal molecular recognition mechanisms beyond induced fit and conformational selection (English)

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2 August 2017

1

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author name string

Bert L de Groot

series ordinal

2

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2 August 2017

4 October 2012

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PLOS Computational Biology

2 August 2017

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2 August 2017

8

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2 August 2017

10

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2 August 2017

e1002704

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Creative Commons Attribution 4.0 International

2 August 2017

start time

4 October 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Kinetic rate constant prediction supports the conformational selection mechanism of protein binding

6 July 2018

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Expanding the conformational selection paradigm in protein-ligand docking

6 July 2018

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Understanding biomolecular motion, recognition, and allostery by use of conformational ensembles.

6 July 2018

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In silico elucidation of the recognition dynamics of ubiquitin

6 July 2018

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Protein-protein docking tested in blind predictions: the CAPRI experiment

6 July 2018

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6 July 2018

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Induced fit, conformational selection and independent dynamic segments: an extended view of binding events

6 July 2018

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From induced fit to conformational selection: a continuum of binding mechanism controlled by the timescale of conformational transitions

6 July 2018

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Conformational selection and induced fit mechanism underlie specificity in noncovalent interactions with ubiquitin

6 July 2018

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The role of dynamic conformational ensembles in biomolecular recognition

6 July 2018

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Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution

6 July 2018

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Structural basis for ubiquitin-mediated dimerization and activation of the ubiquitin protein ligase Cbl-b

6 July 2018

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Canonical sampling through velocity rescaling

6 July 2018

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Structural basis for ubiquitin recognition by the human ESCRT-II EAP45 GLUE domain

6 July 2018

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Comparison of multiple Amber force fields and development of improved protein backbone parameters

6 July 2018

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Application of a Theory of Enzyme Specificity to Protein Synthesis

6 July 2018

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The ubiquitin binding domain ZnF UBP recognizes the C-terminal diglycine motif of unanchored ubiquitin

6 July 2018

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Structural basis for ubiquitin recognition and autoubiquitination by Rabex-5.

6 July 2018

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Exploring the helix-coil transition via all-atom equilibrium ensemble simulations

6 July 2018

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Structure of the ubiquitin hydrolase UCH-L3 complexed with a suicide substrate

6 July 2018

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Structural insights into endosomal sorting complex required for transport (ESCRT-I) recognition of ubiquitinated proteins.

6 July 2018

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Mechanism of ubiquitin recognition by the CUE domain of Vps9p

6 July 2018

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Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde

6 July 2018

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6 July 2018

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Folding funnels and binding mechanisms

6 July 2018

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Folding and binding cascades: shifts in energy landscapes

6 July 2018

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Synthetic, structural and biological studies of the ubiquitin system: the total chemical synthesis of ubiquitin

6 July 2018

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Essential dynamics of proteins

6 July 2018

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Structure of ubiquitin refined at 1.8 A resolution

6 July 2018

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Selected-fit versus induced-fit protein binding: kinetic differences and mutational analysis.

6 July 2018

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Double-sided ubiquitin binding of Hrs-UIM in endosomal protein sorting

27 October 2018

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Ubiquitin recognition by the human TSG101 protein

27 October 2018

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Complementarity of Structure Ensembles in Protein-Protein Binding

27 October 2018

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Proceedings of the 4th Meeting on the Critical Assessment of Predicted Interaction (CAPRI), Barcelona, Spain

27 October 2018

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12 December 2020

Flexibility and conformational entropy in protein-protein binding

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12 December 2020

Hydration thermodynamic properties of amino acid analogues: a systematic comparison of biomolecular force fields and water models

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12 December 2020

Large-amplitude nonlinear motions in proteins

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12 December 2020

10.1371/JOURNAL.PCBI.1002704

Identifiers

DOI

1 reference

journals/ploscb/PetersG12

2 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 August 2017

1 reference

PubMed ID

23055911