Neutral networks in protein space: a computational study based on knowledge-based potentials of mean force (Q34435825)

2 August 2017

Neutral networks in protein space: a computational study based on knowledge-based potentials of mean force (English)

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2 August 2017

computational biology

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4

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2 August 2017

Babajide A

1

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PubMed ID

9261065

2 August 2017

Hofacker IL

series ordinal

2

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PubMed ID

9261065

2 August 2017

Sippl MJ

series ordinal

3

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2 August 2017

1 January 1997

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2 August 2017

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2 August 2017

2

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2 August 2017

261-269

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2 August 2017

5

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One thousand families for the molecular biologist

2 August 2017

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Dali/FSSP classification of three-dimensional protein folds

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Structural classification of proteins: new superfamilies

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Molecular engineering: An approach to the development of general capabilities for molecular manipulation

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

RNA structures and folding: from conventional to new issues in structure predictions

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

An improved pair potential to recognize native protein folds

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Topology fingerprint approach to the inverse protein folding problem

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Protein tertiary structure recognition using optimized Hamiltonians with local interactions

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Recognition of errors in three-dimensional structures of proteins

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Protein superfamilies and domain superfolds

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Principles of protein folding--a perspective from simple exact models.

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Protein design by binary patterning of polar and nonpolar amino acids

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Designing amino acid sequences to fold with good hydrophobic cores

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

From sequences to shapes and back: a case study in RNA secondary structures.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Folded proteins occur frequently in libraries of random amino acid sequences

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Protein folding from a combinatorial perspective

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Why are the same protein folds used to perform different functions?

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Why do protein architectures have Boltzmann-like statistics?

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Emergence of Preferred Structures in a Simple Model of Protein Folding

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Generic properties of combinatory maps: Neutral networks of RNA secondary structures

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Natural Selection and the Concept of a Protein Space

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Smoothness within ruggedness: the role of neutrality in adaptation.

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Exploring phenotype space through neutral evolution.

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Fast folding and comparison of RNA secondary structures

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

RNA secondary structures and their prediction

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Statistics of landscapes based on free energies, replication and degradation rate constants of RNA secondary structures

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Statistics of RNA secondary structures

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

RNA folding and combinatory landscapes

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Statistics of RNA melting kinetics.

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Pattern generation in molecular evolution: Exploitation of the variation in RNA landscapes

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Analysis of RNA sequence structure maps by exhaustive enumeration I. Neutral networks

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Analysis of RNA sequence structure maps by exhaustive enumeration II. Structures of neutral networks and shape space covering

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Algorithm independent properties of RNA secondary structure predictions

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Database of homology-derived protein structures and the structural meaning of sequence alignment

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Error Detecting and Error Correcting Codes

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Structure-derived hydrophobic potential. Hydrophobic potential derived from X-ray structures of globular proteins is able to identify native folds

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Identification of protein folds: matching hydrophobicity patterns of sequence sets with solvent accessibility patterns of known structures

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Assessment of protein models with three-dimensional profiles

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Engineering of stable and fast-folding sequences of model proteins

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

A new approach to the design of stable proteins

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https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

Prediction of protein secondary structure at better than 70% accuracy

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

SOPM: a self-optimized method for protein secondary structure prediction

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2897%2900037-0

7 January 2021

10.1016/S1359-0278(97)00037-0

Identifiers

DOI

1 reference

2 August 2017

1 reference

PubMed ID

9261065