Comparative metagenomic analyses reveal viral-induced shifts of host metabolism towards nucleotide biosynthesis. (Q34411948)

2 August 2017

Comparative metagenomic analyses reveal viral-induced shifts of host metabolism towards nucleotide biosynthesis. (English)

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2 August 2017

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3

Oded Béjà

1 reference

2 August 2017

Hagay Enav

1

1 reference

2 August 2017

Yael Mandel-Gutfreund

series ordinal

2

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2 August 2017

26 March 2014

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2 August 2017

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2 August 2017

2

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2 August 2017

1

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2 August 2017

9

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describes a project that uses

2 August 2017

Cytoscape

object named as

cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/2049-2618-2-9

0 references

cites work

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Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences.

6 July 2018

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6 July 2018

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Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans

6 July 2018

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Abundant SAR11 viruses in the ocean.

6 July 2018

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Marine viruses: truth or dare

6 July 2018

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Viral proteins acquired from a host converge to simplified domain architectures

6 July 2018

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KEGG for integration and interpretation of large-scale molecular data sets

6 July 2018

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Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism

6 July 2018

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Comparative metagenomics of microbial traits within oceanic viral communities

6 July 2018

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Cytoscape 2.8: new features for data integration and network visualization

6 July 2018

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High frequency of horizontal gene transfer in the oceans

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments

6 July 2018

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Reconstructing a puzzle: existence of cyanophages containing both photosystem-I and photosystem-II gene suites inferred from oceanic metagenomic datasets

6 July 2018

1 reference

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Photosystem I gene cassettes are present in marine virus genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

6 July 2018

1 reference

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Modeling the fitness consequences of a cyanophage-encoded photosynthesis gene

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfur-oxidizing prokaryotes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

Dinoflagellates, diatoms, and their viruses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

The evolution of modularity in bacterial metabolic networks.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

Efficient phage-mediated pigment biosynthesis in oceanic cyanobacteria

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

Functional metagenomic profiling of nine biomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

Integration of biological networks and gene expression data using Cytoscape

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

Marine viruses--major players in the global ecosystem

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

Photosynthesis genes in marine viruses yield proteins during host infection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

Genetic organization of the psbAD region in phages infecting marine Synechococcus strains

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

Transfer of photosynthesis genes to and from Prochlorococcus viruses

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

The 2.2 A resolution structure of RpiB/AlsB from Escherichia coli illustrates a new approach to the ribose-5-phosphate isomerase reaction

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

6 July 2018

Bacteriophage T4 Genome

1 reference

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Genomic sequence and evolution of marine cyanophage P60: a new insight on lytic and lysogenic phages

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

Two-component signal transduction

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

KEGG: kyoto encyclopedia of genes and genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

D-Allose catabolism of Escherichia coli: involvement of alsI and regulation of als regulon expression by allose and ribose.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

Marine viruses and their biogeochemical and ecological effects

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

A new ribonucleotide reductase system after infection with phage T4

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

High abundance of viruses found in aquatic environments.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

Nitrate-inducible formate dehydrogenase in Escherichia coli K-12. I. Nucleotide sequence of the fdnGHI operon and evidence that opal (UGA) encodes selenocysteine

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4022391

Occurrence of phosphate acquisition genes in Prochlorococcus cells from different ocean regions

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F2049-2618-2-9

Prevalence of a calcium-based alkaline phosphatase associated with the marine cyanobacterium Prochlorococcus and other ocean bacteria

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F2049-2618-2-9

Marine viruses exploit their host's two-component regulatory system in response to resource limitation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24666644

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Potential photosynthesis gene recombination between Prochlorococcus and Synechococcus via viral intermediates

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24666644

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/2049-2618-2-9

1 reference

Dimensions Publication ID

2 August 2017

0 references

1 reference

2 August 2017

1 reference