Comparison of microarrays and RNA-seq for gene expression analyses of dose-response experiments (Q34382743)

1 August 2017

Comparison of microarrays and RNA-seq for gene expression analyses of dose-response experiments (English)

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1 August 2017

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7

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1 August 2017

Michael B Black

1

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author name string

Bethany B Parks

2

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1 August 2017

Linda Pluta

3

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1 August 2017

Tzu-Ming Chu

4

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1 August 2017

Bruce C Allen

5

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1 August 2017

Russell D Wolfinger

6

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1 August 2017

5 November 2013

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1 August 2017

Toxicological Sciences

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1 August 2017

137

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1 August 2017

385-403

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1 August 2017

2

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Formaldehyde: integrating dosimetry, cytotoxicity, and genomics to understand dose-dependent transitions for an endogenous compound

1 August 2017

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https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

Genomic signatures and dose-dependent transitions in nasal epithelial responses to inhaled formaldehyde in the rat.

21 January 2018

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https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

Toxicogenomics and cancer risk assessment: a framework for key event analysis and dose-response assessment for nongenotoxic carcinogens

21 January 2018

1 reference

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Cross-species comparisons of transcriptomic alterations in human and rat primary hepatocytes exposed to 2,3,7,8-tetrachlorodibenzo-p-dioxin

21 January 2018

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https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

A decade of toxicogenomic research and its contribution to toxicological science

21 January 2018

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https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

Subchronic hepatotoxicity evaluation of bromobenzene in Fischer 344 rats.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

The hepatocarcinogenic conazoles: cyproconazole, epoxiconazole, and propiconazole induce a common set of toxicological and transcriptional responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

Comparative toxicogenomic analysis of oral Cr(VI) exposure effects in rat and mouse small intestinal epithelia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

Gene expression changes induced in the testis by transplacental exposure to high and low doses of 17{alpha}-ethynyl estradiol, genistein, or bisphenol A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

A scaling normalization method for differential expression analysis of RNA-seq data

21 January 2018

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https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

Comparing next-generation sequencing and microarray technologies in a toxicological study of the effects of aristolochic acid on rat kidneys

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

Differential expression in RNA-seq: a matter of depth

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

A method to integrate benchmark dose estimates with genomic data to assess the functional effects of chemical exposure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

Application of transcriptional benchmark dose values in quantitative cancer and noncancer risk assessment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

Integrating pathway-based transcriptomic data into quantitative chemical risk assessment: a five chemical case study

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

Cross-species transcriptomic analysis of mouse and rat lung exposed to chloroprene

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

Temporal concordance between apical and transcriptional points of departure for chemical risk assessment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

RNA-Seq provides new insights in the transcriptome responses induced by the carcinogen benzo[a]pyrene

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

BMDExpress: a software tool for the benchmark dose analyses of genomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FTOXSCI%2FKFT249

21 January 2018

Identifiers

DOI

10.1093/TOXSCI/KFT249

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1 August 2017

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