Primate genome architecture influences structural variation mechanisms and functional consequences (Q34369514)

1 August 2017

Primate genome architecture influences structural variation mechanisms and functional consequences (English)

1 reference

1 August 2017

Jelena Tica

3

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Ryan E. Mills

object named as

Ryan E Mills

12

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Omer Gokcumen

object named as

Omer Gokcumen

1

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Vladimir Benes

object named as

Vladimir Benes

11

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author name string

Verena Tischler

2

1 reference

1 August 2017

Qihui Zhu

4

1 reference

1 August 2017

Rebecca C Iskow

5

1 reference

1 August 2017

Eunjung Lee

6

1 reference

1 August 2017

Markus Hsi-Yang Fritz

7

1 reference

1 August 2017

Amy Langdon

8

1 reference

1 August 2017

Adrian M Stütz

9

1 reference

1 August 2017

Pavlos Pavlidis

10

1 reference

1 August 2017

Peter J Park

13

1 reference

1 August 2017

Charles Lee

14

1 reference

1 August 2017

Jan O Korbel

15

1 reference

1 August 2017

language of work or name

English

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publication date

6 September 2013

1 reference

Proceedings of the National Academy of Sciences of the United States of America

1 August 2017

1 reference

1 August 2017

110

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1 August 2017

39

1 reference

1 August 2017

15764-15769

1 reference

Phenotypic impact of genomic structural variation: insights from and for human disease

1 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

The ortholog conjecture is untestable by the current gene ontology but is supported by RNA sequencing data

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Evolution of genetic and genomic features unique to the human lineage

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

An integrated map of genetic variation from 1,092 human genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Regulatory element copy number differences shape primate expression profiles.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Landscape of somatic retrotransposition in human cancers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

The bonobo genome compared with the chimpanzee and human genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Orangutan Alu quiescence reveals possible source element: support for ancient backseat drivers

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

A fine-scale chimpanzee genetic map from population sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

The evolution of gene expression levels in mammalian organs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

A comprehensive map of mobile element insertion polymorphisms in humans

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Relating CNVs to transcriptome data at fine resolution: assessment of the effect of variant size, type, and overlap with functional regions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Copy number variation analysis in the great apes reveals species-specific patterns of structural variation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Refinement of primate copy number variation hotspots identifies candidate genomic regions evolving under positive selection.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Mapping copy number variation by population-scale genome sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Comparative and demographic analysis of orang-utan genomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

A human genome structural variation sequencing resource reveals insights into mutational mechanisms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Characterization and expression of HLysG2, a basic goose-type lysozyme from the human eye and testis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Diversity of human copy number variation and multicopy genes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Mechanisms of change in gene copy number

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

A burst of segmental duplications in the genome of the African great ape ancestor

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Explaining human uniqueness: genome interactions with environment, behaviour and culture

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Copy number variation and evolution in humans and chimpanzees

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Genome-wide detection and characterization of positive selection in human populations

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Paired-end mapping reveals extensive structural variation in the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Diet and the evolution of human amylase gene copy number variation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Relative impact of nucleotide and copy number variation on gene expression phenotypes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Human lineage-specific amplification, selection, and neuronal expression of DUF1220 domains

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

The jewels of our genome: the search for the genomic changes underlying the evolutionarily unique capacities of the human brain

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Initial sequence of the chimpanzee genome and comparison with the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Divergence of spatial gene expression profiles following species-specific gene duplications in human and mouse

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Gene duplication and speciation in Drosophila: evidence from the Odysseus locus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Detection of large-scale variation in the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Large-scale copy number polymorphism in the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

The structure and early evolution of recently arisen gene duplicates in the Caenorhabditis elegans genome.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Genome architecture, rearrangements and genomic disorders

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3785719

Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques.

6 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1305904110

Segmental copy number variation shapes tissue transcriptomes.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1305904110

Analysis of copy number variation in the rhesus macaque genome identifies candidate loci for evolutionary and human disease studies

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1305904110

Accelerated evolution after gene duplication: a time-dependent process affecting just one copy

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24014587

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1305904110

1 reference

1 August 2017

0 references

1 reference

1 August 2017

1 reference