Diagnostic biomarkers are hidden in the infected host's epigenome (Q34360404)

1 August 2017

Diagnostic biomarkers are hidden in the infected host's epigenome (English)

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1 August 2017

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Stefan He Kaufmann

2

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author name string

Maria M Esterhuyse

series ordinal

1

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1 August 2017

1 July 2013

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Expert Review of Molecular Diagnostics: new diagnostic technologies are set to revolutionise healthcare

1 August 2017

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1 August 2017

13

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1 August 2017

6

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1 August 2017

625-637

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Phenotypic differences in genetically identical organisms: the epigenetic perspective.

1 August 2017

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https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Epigenetics: regulation through repression

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Genome-wide chromatin state transitions associated with developmental and environmental cues

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Epigenetic biomarkers for human cancer: the time is now.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Dedifferentiation, transdifferentiation and reprogramming: three routes to regeneration

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Epigenetic programming and reprogramming during development

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Reprogramming adult Schwann cells to stem cell-like cells by leprosy bacilli promotes dissemination of infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

21 January 2018

The mammalian epigenome

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Relationship between nucleosome positioning and DNA methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Mapping and analysis of chromatin state dynamics in nine human cell types

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Genomic views of distant-acting enhancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Latent enhancers activated by stimulation in differentiated cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

An integrated encyclopedia of DNA elements in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

DNA methylation in health, disease, and cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Epigenetic factors influencing resistance to nuclear reprogramming

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Stem cells, pluripotency and nuclear reprogramming

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Induction of pluripotent stem cells from adult human fibroblasts by defined factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Direct cell reprogramming is a stochastic process amenable to acceleration

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Bacille Calmette-Guerin induces NOD2-dependent nonspecific protection from reinfection via epigenetic reprogramming of monocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Mycobacterium marinum infection of adult zebrafish causes caseating granulomatous tuberculosis and is moderated by adaptive immunity

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Phenotypic and functional plasticity of cells of innate immunity: macrophages, mast cells and neutrophils

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Effector T cell plasticity: flexibility in the face of changing circumstances

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Macrophage plasticity and interaction with lymphocyte subsets: cancer as a paradigm

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Epigenetic control in the immune response

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Helper T cell differentiation is controlled by the cell cycle

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Early transcription and silencing of cytokine genes underlie polarization of T helper cell subsets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

The lineage decisions of helper T cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Silent mysteries: epigenetic paradigms could hold the key to conquering the epidemic of allergy and immune disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Gene Expression Analysis of Toll-Like Receptor Pathways in Heterophils from Genetic Chicken Lines that Differ in Their Susceptibility to Salmonella enteritidis

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

An epigenetic view of helper T cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Epigenetic mechanisms of regulation of Foxp3 expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Epigenetic control of T-helper-cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Epigenetic regulation of the immune system in health and disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Epigenetic mechanisms in inflammation

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Genome-wide promoter DNA methylation dynamics of human hematopoietic progenitor cells during differentiation and aging.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Maintaining cell identity through global control of genomic organization

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Genome-wide profiling of interleukin-4 and STAT6 transcription factor regulation of human Th2 cell programming.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Profiling of CD4+ T cells with epigenetic immune lineage analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Comprehensive epigenetic profiling identifies multiple distal regulatory elements directing transcription of the gene encoding interferon-gamma

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Hematopoietic stem cell: self-renewal versus differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Epigenetics and the adaptive immune response

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

From hematopoietic progenitors to B cells: mechanisms of lineage restriction and commitment

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Harnessing of the nucleosome-remodeling-deacetylase complex controls lymphocyte development and prevents leukemogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Dynamic epigenetic enhancer signatures reveal key transcription factors associated with monocytic differentiation states.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Epigenetic regulation of B lymphocyte differentiation, transdifferentiation, and reprogramming.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

DNA demethylation and histone H3K9 acetylation determine the active transcription of the NKG2D gene in human CD8+ T and NK cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

DNA methylation: a promising landscape for immune system-related diseases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

DNA methylation protects hematopoietic stem cell multipotency from myeloerythroid restriction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

DNA methyltransferase 1 and DNA methylation patterning contribute to germinal center B-cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Regulation of B cell fate commitment and immunoglobulin heavy-chain gene rearrangements by Ikaros.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Stepwise activation of enhancer and promoter regions of the B cell commitment gene Pax5 in early lymphopoiesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Immunological decision-making: how does the immune system decide to mount a helper T-cell response?

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Helper T cell diversity and plasticity

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Regulation of Th2 differentiation and Il4 locus accessibility.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

T helper cell differentiation: regulation by cis elements and epigenetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Global mapping of H3K4me3 and H3K27me3 reveals specificity and plasticity in lineage fate determination of differentiating CD4+ T cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Macrophage biology in development, homeostasis and disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Functional diversity of helper T lymphocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Reversibility of T helper 1 and 2 populations is lost after long-term stimulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Cell cycle controlling the silencing and functioning of mammalian activators.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Th2-specific DNase I-hypersensitive sites in the murine IL-13 and IL-4 intergenic region.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Selective, stable demethylation of the interleukin-2 gene enhances transcription by an active process

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

The molecular basis of the memory T cell response: differential gene expression and its epigenetic regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Gene therapy of the immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Naturally occurring primary deficiencies of the immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

The immune system as a supersystem

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

The central effectors of cell death in the immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Genomic views of the immune system*.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Autoimmune disease: why and where it occurs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Innate immunity to Mycobacterium tuberculosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Does the immune system see tumors as foreign or self?

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Epigenetic modifications and human disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Cutting edge: TCR stimulation is sufficient for induction of Foxp3 expression in the absence of DNA methyltransferase 1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Autophagy and the immune system

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Molecular mechanisms of treg-mediated T cell suppression

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Identification of novel markers in rheumatoid arthritis through integrated analysis of DNA methylation and microRNA expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Interplay among coactivator-associated arginine methyltransferase 1, CBP, and CIITA in IFN-gamma-inducible MHC-II gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Epigenetic control of MHC-II: interplay between CIITA and histone-modifying enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

The MHC class II transactivator: prey and hunter in infectious diseases

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Early epigenetic events regulate the adaptive immune response gene CIITA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Epigenetic regulation of MHC-II and CIITA genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Virological and Immunological Impact of Tuberculosis on Human Immunodeficiency Virus Type 1 Disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Expression of MHC class II molecules in different cellular and functional compartments is controlled by differential usage of multiple promoters of the transactivator CIITA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

The human microbiome: at the interface of health and disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Helicobacter pylori-infection-associated CpG island hypermethylation in the stomach and its possible association with polycomb repressive marks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Enterotypes of the human gut microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

A human gut microbial gene catalogue established by metagenomic sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Molecular pathological epidemiology of epigenetics: emerging integrative science to analyze environment, host, and disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Physical activity, tumor PTGS2 expression, and survival in patients with colorectal cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

T cell CD40LG gene expression and the production of IgG by autologous B cells in systemic lupus erythematosus

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Demethylation of CD40LG on the inactive X in T cells from women with lupus

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Demethylation of ITGAL (CD11a) regulatory sequences in systemic lupus erythematosus

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Demethylation of promoter regulatory elements contributes to perforin overexpression in CD4+ lupus T cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Demethylation of promoter regulatory elements contributes to CD70 overexpression in CD4+ T cells from patients with subacute cutaneous lupus erythematosus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

The functions of E(Z)/EZH2-mediated methylation of lysine 27 in histone H3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Epigenetics in human autoimmunity. Epigenetics in autoimmunity - DNA methylation in systemic lupus erythematosus and beyond

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Environmental exposure, estrogen and two X chromosomes are required for disease development in an epigenetic model of lupus

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Epigenetic regulation of immune cell functions during post-septic immunosuppression

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Histone modifications and chromatin remodeling during bacterial infections

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Epigenetic regulation of dendritic cell-derived interleukin-12 facilitates immunosuppression after a severe innate immune response

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Clinical applications of epigenetic markers and epigenetic profiling in myeloid malignancies

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Endogenous cytosine damage products alter the site selectivity of human DNA maintenance methyltransferase DNMT1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

Impact of inflammation on epigenetic DNA methylation - a novel risk factor for cardiovascular disease?

21 January 2018

1 reference

https://api.crossref.org/works/10.1586%2F14737159.2013.811897

10.1586/14737159.2013.811897

21 January 2018

Identifiers

DOI

1 reference

1 August 2017

1 reference

PubMed ID

23895131