Design and application of a data-independent precursor and product ion repository (Q34357339)

1 August 2017

Design and application of a data-independent precursor and product ion repository (English)

1 reference

1 August 2017

14

James H Scrivens

1 reference

1 August 2017

Georgios Efstathiou

13

0 references

Andrew K Ottens

object named as

Andrew K Ottens

11

0 references

Konstantinos Thalassinos

object named as

Konstantinos Thalassinos

1

0 references

Stefan Tenzer

object named as

Stefan Tenzer

3

0 references

author name string

Johannes P C Vissers

2

1 reference

1 August 2017

Yishai Levin

4

1 reference

1 August 2017

J Will Thompson

5

1 reference

1 August 2017

David Daniel

6

1 reference

1 August 2017

Darrin Mann

7

1 reference

1 August 2017

Mark R DeLong

8

1 reference

1 August 2017

M Arthur Moseley

9

1 reference

1 August 2017

Antoine H America

10

1 reference

1 August 2017

Greg S Cavey

12

1 reference

1 August 2017

James I Langridge

15

1 reference

1 August 2017

Scott J Geromanos

16

1 reference

1 August 2017

31 July 2012

1 reference

Journal of the American Society for Mass Spectrometry

1 August 2017

1 reference

1 August 2017

23

1 reference

1 August 2017

10

1 reference

1 August 2017

1808-1820

1 reference

https://scigraph.springernature.com/pub.10.1007/s13361-012-0416-9

1 August 2017

0 references

cites work

What is a biomarker? Research investments and lack of clinical integration necessitate a review of biomarker terminology and validation schema

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

How to improve reliability and efficiency of research about molecular markers: roles of phases, guidelines, and study design

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

The potential cost of high-throughput proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Algorithms for automatic interpretation of high resolution mass spectra.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

High-speed data reduction, feature detection, and MS/MS spectrum quality assessment of shotgun proteomics data sets using high-resolution mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

BPDA - a Bayesian peptide detection algorithm for mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Post analysis data acquisition for the iterative MS/MS sampling of proteomics mixtures

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Characterization of a TiO₂ enrichment method for label-free quantitative phosphoproteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Quantifying the impact of chimera MS/MS spectra on peptide identification in large-scale proteomics studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

The use of proteome similarity for the qualitative and quantitative profiling of reperfused myocardium

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Accessible proteomics space and its implications for peak capacity for zero-, one- and two-dimensional separations coupled with FT-ICR and TOF mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Simulating and validating proteomics data and search results

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Improving protein and proteome coverage through data-independent multiplexed peptide fragmentation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Peptide identification from mixture tandem mass spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

A HUPO test sample study reveals common problems in mass spectrometry-based proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Potential for false positive identifications from large databases through tandem mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Peptide-to-protein distribution versus a competition for significance to estimate error rate in blood protein identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Tandem mass spectrometry of human tryptic blood peptides calculated by a statistical algorithm and captured by a relational database with exploration by a general statistical analysis system

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

The use of proteotypic peptide libraries for protein identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Optimization and testing of mass spectral library search algorithms for compound identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

The critical evaluation of a comprehensive mass spectral library

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Using annotated peptide mass spectrum libraries for protein identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Development and validation of a spectral library searching method for peptide identification from MS/MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Building consensus spectral libraries for peptide identification in proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Spectrum-to-spectrum searching using a proteome-wide spectral library

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Predicting intensity ranks of peptide fragment ions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Clustering millions of tandem mass spectra

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

A guide to the Proteomics Identifications Database proteomics data repository

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Tranche distributed repository and ProteomeCommons.org

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

NCBI Peptidome: a new repository for mass spectrometry proteomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Antipsychotic treatment alters protein expression associated with presynaptic function and nervous system development in rat frontal cortex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Oligodendrocytes secrete exosomes containing major myelin and stress-protective proteins: Trophic support for axons?

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Proteomic profiling of a layered tissue reveals unique glycolytic specializations of photoreceptor cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Reporting protein identification data: the next generation of guidelines.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Standardization of retention time data for AMT tag proteomics database generation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

An improved model for prediction of retention times of tryptic peptides in ion pair reversed-phase HPLC: its application to protein peptide mapping by off-line HPLC-MALDI MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Using ion mobility data to improve peptide identification: intrinsic amino acid size parameters

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Interlaboratory study characterizing a yeast performance standard for benchmarking LC-MS platform performance.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Characterization of phosphorylated peptides using traveling wave-based and drift cell ion mobility mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

A global analysis of peptide fragmentation variability

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

The importance of peptide detectability for protein identification, quantification, and experiment design in MS/MS proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

An LC-IMS-MS platform providing increased dynamic range for high-throughput proteomic studies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Analysis and quantification of diagnostic serum markers and protein signatures for Gaucher disease.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Protein markers for insulin-producing beta cells with higher glucose sensitivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Towards a proteome signature for invasive ductal breast carcinoma derived from label-free nanoscale LC-MS protein expression profiling of tumorous and glandular tissue

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Crystal structure of the open conformation of the mammalian chaperonin CCT in complex with tubulin

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Metaprotein expression modeling for label-free quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

1H NMR and UPLC-MS(E) statistical heterospectroscopy: characterization of drug metabolites (xenometabolome) in epidemiological studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Comprehensive LC–MSELipidomic Analysis using a Shotgun Approach and Its Application to Biomarker Detection and Identification in Osteoarthritis Patients

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-012-0416-9

Comprehensive LC-MS E lipidomic analysis using a shotgun approach and its application to biomarker detection and identification in osteoarthritis patients

21 January 2018

1 reference

12 December 2020

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

1 reference

12 December 2020

Selective detection of membrane proteins without antibodies: a mass spectrometric version of the Western blot

1 reference

12 December 2020

Enhancements in travelling wave ion mobility resolution

1 reference

12 December 2020

Quantitative proteomic analysis by accurate mass retention time pairs

1 reference

12 December 2020

10.1007/S13361-012-0416-9

Identifiers

DOI

1 reference

Dimensions Publication ID

1 August 2017

1000480788

0 references

Fatcat ID

release_fxbj2funl5b4vip3aluaaiedem

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/fxbj2funl5b4vip3aluaaiedem

24 November 2022

mapped directly with Wikidata item

1 reference