Detecting individual sites subject to episodic diversifying selection (Q34341393)

1 August 2017

Detecting individual sites subject to episodic diversifying selection (English)

1 reference

Sergei L. Kosakovsky Pond

1 August 2017

Ben Murrell

1

0 references

Konrad Scheffler

object named as

Konrad Scheffler

series ordinal

5

0 references

series ordinal

6

object named as

Sergei L Kosakovsky Pond

1 reference

1 August 2017

2

Joel O Wertheim

1 reference

1 August 2017

Sasha Moola

3

1 reference

PubMed ID

22807683

1 August 2017

Thomas Weighill

series ordinal

4

1 reference

1 August 2017

12 July 2012

1 reference

1 August 2017

1 reference

1 August 2017

8

1 reference

1 August 2017

e1002764

1 reference

1 August 2017

7

1 reference

Creative Commons Attribution 4.0 International

1 August 2017

start time

12 July 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Bayes' theorem

1 reference

18 June 2022

https://europepmc.org/article/PMC/3395634

inferred from PubMed Central ID database lookup

cites work

Purifying selection can obscure the ancient age of viral lineages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

A random effects branch-site model for detecting episodic diversifying selection.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Variation in the analysis of positively selected sites using nonsynonymous/synonymous rate ratios: an example using influenza virus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Delineation of an epitope on domain I of Japanese encephalitis virus Envelope glycoprotein using monoclonal antibodies.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Correcting the bias of empirical frequency parameter estimators in codon models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Evolutionary fingerprinting of genes.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Reliabilities of identifying positive selection by the branch-site and the site-prediction methods

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Frequent toggling between alternative amino acids is driven by selection in HIV-1

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Models of coding sequence evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Investigating protein-coding sequence evolution with probabilistic codon substitution models

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Elucidation of phenotypic adaptations: Molecular analyses of dim-light vision proteins in vertebrates

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

A maximum likelihood method for detecting directional evolution in protein sequences and its application to influenza A virus.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

A single positively selected West Nile viral mutation confers increased virogenesis in American crows

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Site-to-site variation of synonymous substitution rates

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

A scan for positively selected genes in the genomes of humans and chimpanzees

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Not so different after all: a comparison of methods for detecting amino acid sites under selection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Modeling the site-specific variation of selection patterns along lineages

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Structural basis of a flavivirus recognized by its neutralizing antibody: solution structure of the domain III of the Japanese encephalitis virus envelope protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Codon-substitution models for heterogeneous selection pressure at amino acid sites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Modeling the covarion hypothesis of nucleotide substitution.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Episodic adaptive evolution of primate lysozymes.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

A codon-based model of nucleotide substitution for protein-coding DNA sequences

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Evolutionary trees from DNA sequences: A maximum likelihood approach

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Evolutionary Rate at the Molecular Level

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Positive darwinian selection observed at the variable-region genes of immunoglobulins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

Adaptive protein evolution at the Adh locus in Drosophila

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3395634

6 July 2018

Causes of HIV diversity

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002764

A model of directional selection applied to the evolution of drug resistance in HIV-1.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002764

Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1002764

Statistical properties of the branch-site test of positive selection

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22807683

12 December 2020

inferred from PubMed ID database lookup

Llama heavy-chain V regions consist of at least four distinct subfamilies revealing novel sequence features

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22807683

12 December 2020

inferred from PubMed ID database lookup

Adaptive evolution of variable region genes encoding an unusual type of immunoglobulin in camelids

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22807683

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1371/JOURNAL.PGEN.1002764

1 reference

1 August 2017

1 reference

1 August 2017

1 reference

PubMed ID

22807683