RNAiFOLD: a constraint programming algorithm for RNA inverse folding and molecular design. (Q34340322)

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29 February 2020

title

RNAiFOLD: a constraint programming algorithm for RNA inverse folding and molecular design (English)

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author name string

Peter Clote

series ordinal

2

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29 February 2020

Ivan Dotu

series ordinal

3

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29 February 2020

publication date

6 February 2013

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Journal of Bioinformatics and Computational Biology

29 February 2020

published in

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29 February 2020

volume

11

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issue

2

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page(s)

1350001

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Genetic control of mammalian T-cell proliferation with synthetic RNA regulatory systems

29 February 2020

cites work

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Engineering BioBrick vectors from BioBrick parts

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Relationship between internucleotide linkage geometry and the stability of RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

The path from the RNA world.

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Small CRISPR RNAs guide antiviral defense in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Control of alternative RNA splicing and gene expression by eukaryotic riboswitches

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Vertebrate microRNA genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Riboswitches control fundamental biochemical pathways in Bacillus subtilis and other bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Searching genomes for ribozymes and riboswitches

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

The chemical repertoire of natural ribozymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Vienna RNA secondary structure server

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

UNAFold: software for nucleic acid folding and hybridization

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Finding the most significant common sequence and structure motifs in a set of RNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Dynalign: an algorithm for finding the secondary structure common to two RNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Classification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine.

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Nucleic acid sequence design via efficient ensemble defect optimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Principles that govern the folding of protein chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

21 January 2018

The Vienna RNA websuite

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Mfold web server for nucleic acid folding and hybridization prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

RNA pseudoknot prediction in energy-based models

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Thermal unfolding of a group I ribozyme: the low-temperature transition is primarily disruption of tertiary structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Topology links RNA secondary structure with global conformation, dynamics, and adaptation

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Assembly mechanisms of RNA pseudoknots are determined by the stabilities of constituent secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

RNA folding causes secondary structure rearrangement

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Fast folding and comparison of RNA secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

A new algorithm for RNA secondary structure design

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

INFO-RNA--a fast approach to inverse RNA folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Rfam: Wikipedia, clans and the "decimal" release

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Paradigms for computational nucleic acid design

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Folding 3-noncrossing RNA pseudoknot structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

VARNA: Interactive drawing and editing of the RNA secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Design of multistable RNA molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

On finding all suboptimal foldings of an RNA molecule

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Computing the partition function for kinetically trapped RNA secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Assessing the reliability of RNA folding using statistical mechanics

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Structural features of metabolite-sensing riboswitches

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Computing folding pathways between RNA secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Structure and function of the hairpin ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Molecular characterization at the RNA and gene levels of U3 snoRNA from a unicellular green alga, Chlamydomonas reinhardtii

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

5S Ribosomal RNA Database

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Structure, folding and activity of the VS ribozyme: importance of the 2-3-6 helical junction

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

A selected ribozyme catalyzing diverse dipeptide synthesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Design and isolation of ribozyme-substrate pairs using RNase P-based ribozymes containing altered substrate binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Comparative structure analysis of vertebrate ribonuclease P RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Comparative analysis of ribonuclease P RNA structure in Archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

Visualizing the solvent-inaccessible core of a group II intron ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1142%2FS0219720013500017

10.1142/S0219720013500017

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23600819%20AND%20SRC:MED&resulttype=core&format=json

journals/jbcb/Garcia-MartinCD13

29 February 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference