Computer aided selection of candidate vaccine antigens (Q34312517)

1 August 2017

title

Computer aided selection of candidate vaccine antigens (English)

1 reference

1 August 2017

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Kamna Ramakrishnan

3

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Irini Doytchinova

object named as

Irini A Doytchinova

5

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author name string

Darren R Flower

1

1 reference

1 August 2017

Isabel K Macdonald

2

1 reference

1 August 2017

Matthew N Davies

4

1 reference

1 August 2017

publication date

3 November 2010

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1 August 2017

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1 August 2017

volume

6 Suppl 2

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1 August 2017

page(s)

S1

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Limitations of Ab initio predictions of peptide binding to MHC class II molecules

1 August 2017

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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On Evaluating MHC-II Binding Peptide Prediction Methods

6 July 2018

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The curation guidelines of the immune epitope database and analysis resource

6 July 2018

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6 July 2018

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6 July 2018

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Computer-aided biotechnology: from immuno-informatics to reverse vaccinology.

6 July 2018

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VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics

6 July 2018

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Recent advances in immune modulation

6 July 2018

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6 July 2018

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Identification and characterization of pathogenicity and other genomic islands using base composition analyses

6 July 2018

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Alpha helical trans-membrane proteins: Enhanced prediction using a Bayesian approach.

6 July 2018

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Beta barrel trans-membrane proteins: Enhanced prediction using a Bayesian approach

6 July 2018

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A predictor of membrane class: Discriminating alpha-helical and beta-barrel membrane proteins from non-membranous proteins

6 July 2018

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TATPred: a Bayesian method for the identification of twin arginine translocation pathway signal sequences

6 July 2018

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LIPPRED: A web server for accurate prediction of lipoprotein signal sequences and cleavage sites

6 July 2018

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WoLF PSORT: protein localization predictor

6 July 2018

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Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Generalized modeling of enzyme-ligand interactions using proteochemometrics and local protein substructures

6 July 2018

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Primer: mechanisms of immunologic tolerance

6 July 2018

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Microbial genomes and vaccine design: refinements to the classical reverse vaccinology approach

6 July 2018

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6 July 2018

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6 July 2018

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Predicting protein subcellular locations using hierarchical ensemble of Bayesian classifiers based on Markov chains

6 July 2018

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Post-genomic vaccine development

6 July 2018

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Predicting the subcellular localization of viral proteins within a mammalian host cell

6 July 2018

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6 July 2018

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PHI-base: a new database for pathogen host interactions

6 July 2018

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AntiJen: a quantitative immunology database integrating functional, thermodynamic, kinetic, biophysical, and cellular data

6 July 2018

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Improved approach for proteochemometrics modeling: application to organic compound--amine G protein-coupled receptor interactions

6 July 2018

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T cell receptor recognition of a 'super-bulged' major histocompatibility complex class I-bound peptide

6 July 2018

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A computational approach for identifying pathogenicity islands in prokaryotic genomes

6 July 2018

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Identification of a universal Group B streptococcus vaccine by multiple genome screen

6 July 2018

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Prediction of twin-arginine signal peptides

6 July 2018

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The design and implementation of the immune epitope database and analysis resource

6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Secreted protein prediction system combining CJ-SPHMM, TMHMM, and PSORT.

6 July 2018

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DBSubLoc: database of protein subcellular localization

6 July 2018

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Prediction of lipoprotein signal peptides in Gram-negative bacteria

6 July 2018

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6 July 2018

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6 July 2018

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PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria

6 July 2018

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MHCBN: a comprehensive database of MHC binding and non-binding peptides

6 July 2018

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JenPep: a database of quantitative functional peptide data for immunology

6 July 2018

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Bacterial virulence: can we draw the line?

6 July 2018

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Use of a whole genome approach to identify vaccine molecules affording protection against Streptococcus pneumoniae infection

6 July 2018

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The lipocalin protein family: structural and sequence overview

6 July 2018

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Identification of vaccine candidates against serogroup B meningococcus by whole-genome sequencing.

6 July 2018

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Complete Genome Sequence of Neisseria meningitidis Serogroup B Strain MC58

6 July 2018

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SYFPEITHI: database for MHC ligands and peptide motifs

6 July 2018

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PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization

6 July 2018

1 reference

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New chemical descriptors relevant for the design of biologically active peptides. A multivariate characterization of 87 amino acids

6 July 2018

1 reference

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The lipocalin protein family: structure and function

6 July 2018

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Structural relationship of streptavidin to the calycin protein superfamily

6 July 2018

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Structure and sequence relationships in the lipocalins and related proteins

6 July 2018

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Peptide quantitative structure-activity relationships, a multivariate approach.

6 July 2018

1 reference

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Prediction of pathogenicity islands in enterohemorrhagic Escherichia coli O157:H7 using genomic barcodes.

6 July 2018

1 reference

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Peptide binding to the HLA-DRB1 supertype: a proteochemometrics analysis.

28 October 2018

1 reference

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Proteins accessible to immune surveillance show significant T-cell epitope depletion: Implications for vaccine design.

28 October 2018

1 reference

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Proteochemometrics mapping of the interaction space for retroviral proteases and their substrates

28 October 2018

1 reference

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Identifying CpG islands by different computational techniques

28 October 2018

1 reference

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Are bacterial vaccine antigens T-cell epitope depleted?

28 October 2018

1 reference

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SYFPEITHI: database for searching and T-cell epitope prediction

28 October 2018

1 reference

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Cutting edge: contributions of apoptosis and anergy to systemic T cell tolerance

28 October 2018

1 reference

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Combining algorithms to predict bacterial protein sub-cellular location: Parallel versus concurrent implementations

28 October 2018

1 reference

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Toward bacterial protein sub-cellular location prediction: single-class discrimminant models for all gram- and gram+ compartments

28 October 2018

1 reference

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Multi-class subcellular location prediction for bacterial proteins

28 October 2018

1 reference

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Identifying candidate subunit vaccines using an alignment-independent method based on principal amino acid properties.

28 October 2018

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Rough set-based proteochemometrics modeling of G-protein-coupled receptor-ligand interactions

28 October 2018

1 reference

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The immune epitope database and analysis resource: from vision to blueprint.

28 October 2018

1 reference

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Have we cut ourselves too short in mapping CTL epitopes?

28 October 2018

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Benchmarking B cell epitope prediction: underperformance of existing methods

28 October 2018

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JenPep: a novel computational information resource for immunobiology and vaccinology.

28 October 2018

1 reference

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Proteochemometrics modeling of the interaction of amine G-protein coupled receptors with a diverse set of ligands

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2981880

Identification and characterization of specific sequences encoding pathogenicity associated proteins in the genome of commensal Neisseria species

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2981880

In SilicoTools for Predicting Peptides Binding to HLA-Class II Molecules: More Confusion than Conclusion

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2981880

New vaccines against tuberculosis

28 October 2018

1 reference

12 December 2020

EPIMHC: a curated database of MHC-binding peptides for customized computational vaccinology

1 reference

12 December 2020

SubLoc: a server/client suite for protein subcellular location based on SOAP

1 reference

12 December 2020

Epitopic peptides with low similarity to the host proteome: towards biological therapies without side effects

1 reference

12 December 2020

A critical cross-validation of high throughput structural binding prediction methods for pMHC

1 reference

12 December 2020

Identification of vaccine candidate antigens from a genomic analysis of Porphyromonas gingivalis

1 reference

12 December 2020

10.1186/1745-7580-6-S2-S1

Identifiers

DOI

1 reference

Dimensions Publication ID

1 August 2017

0 references

1 reference

1 August 2017

1 reference