Cleaning up with genomics: applying molecular biology to bioremediation (Q34308270)

1 August 2017

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title

Cleaning up with genomics: applying molecular biology to bioremediation (English)

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1 August 2017

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1

Derek R Lovley

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PubMed ID

15040178

1 August 2017

language of work or name

English

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publication date

1 October 2003

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Nature Reviews Microbiology

1 August 2017

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1 August 2017

1

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1 August 2017

35-44

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1 August 2017

1

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https://scigraph.springernature.com/pub.10.1038/nrmicro731

1 August 2017

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cites work

Bioremediation. Anaerobes to the rescue

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https://api.crossref.org/works/10.1038%2FNRMICRO731

Electrode-reducing microorganisms that harvest energy from marine sediments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Stimulated anoxic biodegradation of aromatic hydrocarbons using Fe(III) ligands

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO731

Humic substances as electron acceptors for microbial respiration

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Metabolism of alkylbenzenes, alkanes, and other hydrocarbons in anaerobic bacteria

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Reductive dechlorination in the energy metabolism of anaerobic bacteria

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Emerging techniques for anaerobic bioremediation of contaminated environments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Microbial reduction of uranium

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Environmentally relevant microorganisms.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Enrichment of Geobacter Species in Response to Stimulation of Fe(III) Reduction in Sandy Aquifer Sediments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Relationships between microbial community structure and hydrochemistry in a landfill leachate-polluted aquifer.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Oxidation of aromatic contaminants coupled to microbial iron reduction

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Enrichment of members of the family Geobacteraceae associated with stimulation of dissimilatory metal reduction in uranium-contaminated aquifer sediments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Assessment of indigenous reductive dechlorinating potential at a TCE-contaminated site using microcosms, polymerase chain reaction analysis, and site data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Phylogenetic characterization of microbial communities that reductively dechlorinate TCE based upon a combination of molecular techniques

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Molecular analysis of Dehalococcoides 16S ribosomal DNA from chloroethene-contaminated sites throughout North America and Europe

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Specific 16S rDNA sequences associated with naphthalene degradation under sulfate-reducing conditions in harbor sediments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Naturally Occurring Bacteria Similar to the Methyl tert -Butyl Ether (MTBE)-Degrading Strain PM1 Are Present in MTBE-Contaminated Groundwater

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

A molecular view of microbial diversity and the biosphere

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Complete detoxification of vinyl chloride by an anaerobic enrichment culture and identification of the reductively dechlorinating population as a Dehalococcoides species.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Reductive dehalogenation of chlorinated dioxins by an anaerobic bacterium

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Detection in coal tar waste-contaminated groundwater of mRNA transcripts related to naphthalene dioxygenase by fluorescent in situ hybridization with tyramide signal amplification

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Geobacter metallireducens accesses insoluble Fe(III) oxide by chemotaxis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Mechanisms for Fe(III) Oxide Reduction in Sedimentary Environments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Mechanisms for accessing insoluble Fe(III) oxide during dissimilatory Fe(III) reduction by Geothrix fermentans

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

A role for excreted quinones in extracellular electron transfer.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Biochemical and genetic characterization of PpcA, a periplasmic c-type cytochrome in Geobacter sulfurreducens

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

OmcB, a c-type polyheme cytochrome, involved in Fe(III) reduction in Geobacter sulfurreducens

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

The challenges of in silico biology

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Metabolic modeling of microbial strains in silico.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Metabolic network structure determines key aspects of functionality and regulation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Effect of Escherichia coli biomass composition on central metabolic fluxes predicted by a stoichiometric model

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Transcriptional regulation in constraints-based metabolic models of Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Genome-scale metabolic model of Helicobacter pylori 26695.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Analysis of the genetic potential and gene expression of microbial communities involved in the in situ bioremediation of uranium and harvesting electrical energy from organic matter

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Microbial population genomics and ecology

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Bacterial rhodopsin: evidence for a new type of phototrophy in the sea

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Proteorhodopsin phototrophy in the ocean.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

First insight into the genome of an uncultivated crenarchaeote from soil

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Monitoring gene expression in mixed microbial communities by using DNA microarrays

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Approaches to prokaryotic biodiversity: a population genetics perspective.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Direct cloning from enrichment cultures, a reliable strategy for isolation of complete operons and genes from microbial consortia

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

The future for culturing environmental organisms: a golden era ahead?

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Cultivation of the ubiquitous SAR11 marine bacterioplankton clade.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Cyclic AMP and acyl homoserine lactones increase the cultivation efficiency of heterotrophic bacteria from the central Baltic Sea.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Cultivating the uncultured

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

The photosynthetic apparatus of Prochlorococcus: Insights through comparative genomics.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

MODFLOW/MT3DMS-based reactive multicomponent transport modeling.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Isolation of a bacterium that reductively dechlorinates tetrachloroethene to ethene

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Metabolic diversity in aromatic compound utilization by anaerobic microbes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Anaerobic benzene oxidation coupled to nitrate reduction in pure culture by two strains of Dechloromonas

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Geographic distribution of Desulfitobacterium frappieri PCP-1 and Desulfitobacterium spp. in soils from the province of Quebec, Canada

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

Anaerobic degradation of polycyclic aromatic hydrocarbons and alkanes in petroleum-contaminated marine harbor sediments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

7 January 2021

merA gene expression in aquatic environments measured by mRNA production and Hg(II) volatilization

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

7 January 2021

Detection of the merA gene and its expression in the environment

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

7 January 2021

Genomic analysis reveals chromosomal variation in natural populations of the uncultured psychrophilic archaeon Cenarchaeum symbiosum

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

7 January 2021

Reduction of uranium by Desulfovibrio desulfuricans

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

7 January 2021

Reduction of Chromate by Desulfovibrio vulgaris and Its c(3) Cytochrome

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO731

7 January 2021

Identifiers

DOI

10.1038/NRMICRO731

1 reference

PubMed ID

15040178

Dimensions Publication ID

1 August 2017

0 references

1 reference

PubMed ID

15040178