The local transcriptome in the synaptic neuropil revealed by deep sequencing and high-resolution imaging (Q34266527)

1 August 2017

The local transcriptome in the synaptic neuropil revealed by deep sequencing and high-resolution imaging (English)

1 reference

1 August 2017

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Iván J Cajigas

1

1 reference

1 August 2017

Georgi Tushev

2

1 reference

1 August 2017

Tristan J Will

3

1 reference

1 August 2017

Susanne tom Dieck

4

1 reference

1 August 2017

Nicole Fuerst

5

1 reference

1 August 2017

Erin M Schuman

6

1 reference

1 August 2017

language of work or name

English

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publication date

1 May 2012

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1 August 2017

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1 August 2017

74

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1 August 2017

453-466

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1 August 2017

3

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describes a project that uses

1 August 2017

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3627340/fullTextXML

inferred from PubMed Central ID database lookup

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A quantitative comparison of cell-type-specific microarray gene expression profiling methods in the mouse brain

6 July 2018

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The dendritic branch is the preferred integrative unit for protein synthesis-dependent LTP.

6 July 2018

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Subcellular profiling reveals distinct and developmentally regulated repertoire of growth cone mRNAs.

6 July 2018

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The mouse blood-brain barrier transcriptome: a new resource for understanding the development and function of brain endothelial cells

6 July 2018

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Microfluidic local perfusion chambers for the visualization and manipulation of synapses

6 July 2018

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An NGF-responsive element targets myo-inositol monophosphatase-1 mRNA to sympathetic neuron axons

6 July 2018

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Experience-dependent compartmentalized dendritic plasticity in rat hippocampal CA1 pyramidal neurons

6 July 2018

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mRNA localization: gene expression in the spatial dimension

6 July 2018

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Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

6 July 2018

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Making synaptic plasticity and memory last: mechanisms of translational regulation

6 July 2018

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RNA-Seq: a revolutionary tool for transcriptomics

6 July 2018

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Application of a translational profiling approach for the comparative analysis of CNS cell types

6 July 2018

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Neuronal diversity and temporal dynamics: the unity of hippocampal circuit operations

6 July 2018

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Function and regulation of local axonal translation

6 July 2018

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Global considerations in hierarchical clustering reveal meaningful patterns in data

6 July 2018

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Active dendrites: colorful wings of the mysterious butterflies.

6 July 2018

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Direct multiplexed measurement of gene expression with color-coded probe pairs

6 July 2018

1 reference

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A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function

6 July 2018

1 reference

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Dysregulated metabotropic glutamate receptor-dependent translation of AMPA receptor and postsynaptic density-95 mRNAs at synapses in a mouse model of fragile X syndrome

6 July 2018

1 reference

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Genome-wide atlas of gene expression in the adult mouse brain

6 July 2018

1 reference

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Dendritic protein synthesis, synaptic plasticity, and memory

6 July 2018

1 reference

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Dendritic mRNAs encode diversified functionalities in hippocampal pyramidal neurons

6 July 2018

1 reference

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Molecular taxonomy of major neuronal classes in the adult mouse forebrain

6 July 2018

1 reference

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BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks

6 July 2018

1 reference

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GMAP: a genomic mapping and alignment program for mRNA and EST sequences

6 July 2018

1 reference

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A role for dendritic protein synthesis in hippocampal late LTP.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Single-Cell Microarray Analysis in Hippocampus CA1: Demonstration and Validation of Cellular Heterogeneity

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Activity-Dependent Trafficking and Dynamic Localization of Zipcode Binding Protein 1 and β-Actin mRNA in Dendrites and Spines of Hippocampal Neurons

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Tetanic stimulation leads to increased accumulation of Ca(2+)/calmodulin-dependent protein kinase II via dendritic protein synthesis in hippocampal neurons.

6 July 2018

1 reference

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Synapse-specific, long-term facilitation of aplysia sensory to motor synapses: a function for local protein synthesis in memory storage

6 July 2018

1 reference

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Prominent dendritic localization in forebrain neurons of a novel mRNA and its product, dendrin

6 July 2018

1 reference

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The 3'-untranslated region of CaMKII alpha is a cis-acting signal for the localization and translation of mRNA in dendrites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Protein synthesis within dendrites: glycosylation of newly synthesized proteins in dendrites of hippocampal neurons in culture.

6 July 2018

1 reference

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A requirement for local protein synthesis in neurotrophin-induced hippocampal synaptic plasticity

6 July 2018

1 reference

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Selective localization of messenger RNA for cytoskeletal protein MAP2 in dendrites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

In situ hybridization histochemistry of Ca2+/calmodulin-dependent protein kinase in developing rat brain.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Construction of a uniform-abundance (normalized) cDNA library

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Overlapping probabilities of top ranking gene lists, hypergeometric distribution, and stringency of gene selection criterion.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Postsynaptic decoding of neural activity: eEF2 as a biochemical sensor coupling miniature synaptic transmission to local protein synthesis.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Identification of process-localized mRNAs from cultured rodent hippocampal neurons.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Activity- and mTOR-dependent suppression of Kv1.1 channel mRNA translation in dendrites.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Miniature neurotransmission stabilizes synaptic function via tonic suppression of local dendritic protein synthesis.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Polarized secretory trafficking directs cargo for asymmetric dendrite growth and morphogenesis.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Dopaminergic stimulation of local protein synthesis enhances surface expression of GluR1 and synaptic transmission in hippocampal neurons

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Regulation of dendritic protein synthesis by miniature synaptic events.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Differential expression and dendritic transcript localization of Shank family members: identification of a dendritic targeting element in the 3' untranslated region of Shank1 mRNA.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Dual modes of endoplasmic reticulum-to-Golgi transport in dendrites revealed by live-cell imaging.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Disruption of dendritic translation of CaMKIIalpha impairs stabilization of synaptic plasticity and memory consolidation.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Polyribosomes redistribute from dendritic shafts into spines with enlarged synapses during LTP in developing rat hippocampal slices.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Dynamic visualization of local protein synthesis in hippocampal neurons

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Preferential localization of polyribosomes under the base of dendritic spines in granule cells of the dentate gyrus.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3627340

Role for Rapid Dendritic Protein Synthesis in Hippocampal mGluR-Dependent Long-Term Depression

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22578497

12 December 2020

inferred from PubMed ID database lookup

In situ localization of microtubule-associated protein mRNA in the developing and adult rat brain

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22578497

12 December 2020

inferred from PubMed ID database lookup

Dendritic and postsynaptic protein synthetic machinery

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22578497

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1016/J.NEURON.2012.02.036

1 reference

1 August 2017

1 reference

1 August 2017

1 reference