Visualization and enumeration of bacteria carrying a specific gene sequence by in situ rolling circle amplification (Q34232421)

31 July 2017

title

Visualization and enumeration of bacteria carrying a specific gene sequence by in situ rolling circle amplification (English)

1 reference

31 July 2017

1 reference

Fumito Maruyama

1

1 reference

31 July 2017

Takehiko Kenzaka

2

1 reference

31 July 2017

Nobuyasu Yamaguchi

3

1 reference

31 July 2017

Katsuji Tani

4

1 reference

31 July 2017

Masao Nasu

5

1 reference

31 July 2017

language of work or name

English

0 references

publication date

1 December 2005

1 reference

Applied and Environmental Microbiology

31 July 2017

published in

1 reference

31 July 2017

volume

71

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31 July 2017

issue

12

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31 July 2017

page(s)

7933-7940

1 reference

Simplified sample preparation using frame spotting method for direct counting of total bacteria by fluorescence microscopy.

31 July 2017

cites work

1 reference

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6 July 2018

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Simultaneous fluorescence in situ hybridization of mRNA and rRNA in environmental bacteria

6 July 2018

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Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and Archaea in the deep ocean.

6 July 2018

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Detection of bacteria carrying the stx2 gene by in situ loop-mediated isothermal amplification

6 July 2018

1 reference

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Fluorescence in situ hybridisation for the identification and characterisation of prokaryotes

6 July 2018

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An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridization

6 July 2018

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Natural genetic transformation in monoculture Acinetobacter sp. strain BD413 biofilms

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria

6 July 2018

1 reference

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Natural genetic transformation of clinical isolates of Escherichia coli in urine and water

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Monitoring of Ralstonia eutropha KT1 in groundwater in an experimental bioaugmentation field by in situ PCR.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Detection of DNA point mutations and mRNA expression levels by rolling circle amplification in individual cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

DNA as a Nutrient: Novel Role for Bacterial Competence Gene Homologs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

High-throughput genotyping of single nucleotide polymorphisms with rolling circle amplification

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Simultaneous direct counting of total and specific microbial cells in seawater, using a deep-sea microbe as target

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

In situ reverse transcription-PCR for monitoring gene expression in individual Methanosarcina mazei S-6 cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Amplification of padlock probes for DNA diagnostics by cascade rolling circle amplification or the polymerase chain reaction

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

6 July 2018

DNA uptake in bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Bacterial viability and culturability

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

High rates of conjugation in bacterial biofilms as determined by quantitative in situ analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Identification and characterization of a newly isolated shiga toxin 2-converting phage from shiga toxin-producing Escherichia coli.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Mutation detection and single-molecule counting using isothermal rolling-circle amplification

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Development of a direct in situ PCR method for detection of specific bacteria in natural environments

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Visualization of specific gene expression in individual Salmonella typhimurium cells by in situ PCR.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Improved methods for in situ enzymatic amplification and detection of low copy number genes in bacteria.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Identification of bacterial cells by chromosomal painting.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

System to study horizontal gene exchange among microorganisms without cultivation of recipients

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Genetic transformation in freshwater: Escherichia coli is able to develop natural competence

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Bacterial gene transfer by natural genetic transformation in the environment

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Phylogenetic identification and in situ detection of individual microbial cells without cultivation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Survival strategies of bacteria in the natural environment.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Prolonged incubation in calcium chloride improves the competence of Escherichia coli cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Transformation of colonial Escherichia coli on solid media.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Recognition of individual genes in a single bacterial cell by fluorescence in situ hybridization--RING-FISH.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Involvement of rpoS in the survival of Escherichia coli in the viable but non‐culturable state

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Assessment of GFP fluorescence in cells of Streptococcus gordonii under conditions of low pH and low oxygen concentration

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

Non-genetic population heterogeneity studied by in situ polymerase chain reaction

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1317385

In situ detection of a virulence factor mRNA and 16S rRNA in Listeria monocytogenes

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16332770

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Subcellular localization of plasmids containing the oriC region of the Escherichia coli chromosome, with or without the sopABC partitioning system

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16332770

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/AEM.71.12.7933-7940.2005

1 reference

31 July 2017

1 reference

31 July 2017

1 reference