Dependence of DNA polymerase replication rate on external forces: a model based on molecular dynamics simulations (Q34186979)

31 July 2017

title

Dependence of DNA polymerase replication rate on external forces: a model based on molecular dynamics simulations (English)

1 reference

31 July 2017

4

Martin Karplus

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31 July 2017

3

Dudley Herschbach

1 reference

31 July 2017

Ioan Andricioaei

1

1 reference

31 July 2017

Anita Goel

series ordinal

2

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31 July 2017

language of work or name

English

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publication date

1 September 2004

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31 July 2017

number of pages

20

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inferred from page(s)

published in

Biophysical Journal

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31 July 2017

volume

87

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31 July 2017

issue

3

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31 July 2017

page(s)

1478-1497

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Conformational dynamics of the chromatin fiber in solution: determinants, mechanisms, and functions

31 July 2017

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Crystal structure of the large fragment of Thermus aquaticus DNA polymerase I at 2.5-A resolution: structural basis for thermostability

5 July 2018

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5 July 2018

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Elementary steps in the DNA polymerase I reaction pathway

5 July 2018

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Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP

5 July 2018

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How DNA travels between the separate polymerase and 3'-5'-exonuclease sites of DNA polymerase I (Klenow fragment).

5 July 2018

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Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant

5 July 2018

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Kinetic mechanism of DNA polymerase I(Klenow fragment): identification of a second conformational change and evaluation of the internal equilibrium constant

5 July 2018

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5 July 2018

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Force and velocity measured for single molecules of RNA polymerase.

5 July 2018

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28 October 2018

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DNA: an extensible molecule.

28 October 2018

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Importance of oligoelectrolyte end effects for the thermodynamics of conformational transitions of nucleic acid oligomers: A grand canonical Monte Carlo analysis

28 October 2018

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Interaction of DNA polymerase I (Klenow fragment) with the single-stranded template beyond the site of synthesis

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12 December 2020

Structure, force, and energy of a double-stranded DNA oligonucleotide under tensile loads

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Getting a grip on how DNA polymerases function

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Energy landscapes of receptor-ligand bonds explored with dynamic force spectroscopy

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Inertia and driving force of chemical reactions

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Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

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A unified formulation of the constant temperature molecular dynamics methods

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Molecular Dynamics Simulation of DNA Stretching Is Consistent with the Tension Observed for Extension and Strand Separation and Predicts a Novel Ladder Structure

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Identifiers

DOI

10.1529/BIOPHYSJ.103.039313

1 reference

31 July 2017

1 reference

31 July 2017

1 reference