Dissecting the molecular origins of specific protein-nucleic acid recognition: hydrostatic pressure and molecular dynamics (Q34179637)

31 July 2017

title

Dissecting the molecular origins of specific protein-nucleic acid recognition: hydrostatic pressure and molecular dynamics (English)

1 reference

31 July 2017

4

Klaus Schulten

1 reference

31 July 2017

Thomas W Lynch

1

1 reference

31 July 2017

Dorina Kosztin

series ordinal

2

1 reference

31 July 2017

Mark A McLean

series ordinal

3

1 reference

31 July 2017

Stephen G Sligar

series ordinal

5

1 reference

31 July 2017

language of work or name

English

0 references

publication date

1 January 2002

1 reference

31 July 2017

number of pages

6

1 reference

based on heuristic

inferred from page(s)

published in

Biophysical Journal

1 reference

31 July 2017

volume

82

1 reference

31 July 2017

issue

1 Pt 1

1 reference

31 July 2017

page(s)

93-98

1 reference

Free energy calculations and molecular dynamics simulations of wild-type and variants of the DNA-EcoRI complex

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

The role of metals in catalysis by the restriction endonuclease BamHI

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Changes in solvation during DNA binding and cleavage are critical to altered specificity of the EcoRI endonuclease

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Binding of the estrogen receptor to DNA. The role of waters

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Factors that affect the stability of protein-DNA complexes during gel electrophoresis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Macromolecules and water: probing with osmotic stress

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Tandem binding in crystals of a trp repressor/operator half-site complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

A thermodynamic study of the trp repressor-operator interaction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Structure of restriction endonuclease bamhi phased at 1.95 A resolution by MAD analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Analysis of dissociation and unfolding of oligomeric proteins using a flat bed gel electrophoresis at high pressure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Structure and function of restriction endonucleases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Heterogeneity in molecular recognition by restriction endonucleases: osmotic and hydrostatic pressure effects on BamHI, Pvu II, and EcoRV specificity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Slab gel electrophoresis of oligomeric proteins under high hydrostatic pressure. I. Description of the system and demonstration of the pressure dissociation of a dimer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Crystal structure of trp repressor/operator complex at atomic resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Origins of netropsin binding affinity and specificity: correlations of thermodynamic and structural data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Measurement of protein-DNA interaction parameters by electrophoresis mobility shift assay

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Role of the hydrophobic effect in stability of site-specific protein-DNA complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Macromolecular binding equilibria in the lac repressor system: studies using high-pressure fluorescence spectroscopy.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Application of fluorescence energy transfer and polarization to monitor Escherichia coli cAMP receptor protein and lac promoter interaction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Isolation of a sequence-specific endonuclease (BamI) from Bacillus amyloliquefaciens H

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1302451

Molecular dynamics study of glucocorticoid receptor-DNA binding

28 October 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975376-9

A method for linking fluorescent labels to polynucleotides: application to studies of ribosome-ribonucleic acid interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975376-9

Macromolecular hydration changes associated with BamHI binding and catalysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975376-9

Hydrostatic and osmotic pressure as tools to study macromolecular recognition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975376-9

The role of water in protein-DNA interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975376-9

Crystallization and preliminary X-ray analysis of restriction endonuclease BamHI-DNA complex

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2802%2975376-9

NAMD: a Parallel, Object-Oriented Molecular Dynamics Program

7 January 2021

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1177/109434209601000401

10.1016/S0006-3495(02)75376-9

22 October 2022

Identifiers

DOI

1 reference

release_ymyjdnzxmbbpblozfm3ywdp4ma

31 July 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/ymyjdnzxmbbpblozfm3ywdp4ma

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

1302451

1 reference

31 July 2017

1 reference