Depletion of abundant plasma proteins and limitations of plasma proteomics. (Q34168719)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20677825%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

title

Depletion of abundant plasma proteins and limitations of plasma proteomics (English)

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9 February 2020

1

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9 February 2020

Daniel C. Liebler

7

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9 February 2020

6

Robbert J C Slebos

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9 February 2020

author name string

Paul A Rudnick

2

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9 February 2020

Misti Y Martinez

3

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9 February 2020

Kristin L Cheek

4

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9 February 2020

Stephen E Stein

5

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9 February 2020

publication date

1 October 2010

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Journal of Proteome Research

9 February 2020

published in

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9 February 2020

volume

9

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9 February 2020

page(s)

4982-4991

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9 February 2020

issue

10

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IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering

9 February 2020

cites work

1 reference

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Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis.

5 July 2018

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Universal sample preparation method for proteome analysis

5 July 2018

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Depletion of one, six, twelve or twenty major blood proteins before proteomic analysis: the more the better?

5 July 2018

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Affinity prefractionation for MS-based plasma proteomics

5 July 2018

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Evaluation of strong cation exchange versus isoelectric focusing of peptides for multidimensional liquid chromatography-tandem mass spectrometry

5 July 2018

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Enhanced detection of low abundance human plasma proteins using a tandem IgY12-SuperMix immunoaffinity separation strategy.

5 July 2018

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Proteomic parsimony through bipartite graph analysis improves accuracy and transparency

5 July 2018

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MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis

5 July 2018

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Evaluation of multiprotein immunoaffinity subtraction for plasma proteomics and candidate biomarker discovery using mass spectrometry.

5 July 2018

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Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study

5 July 2018

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Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment

5 July 2018

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Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations

5 July 2018

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Comparison of different depletion strategies for improved resolution in proteomic analysis of human serum samples.

5 July 2018

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A model for random sampling and estimation of relative protein abundance in shotgun proteomics

5 July 2018

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An investigation into the human serum "interactome"

5 July 2018

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Multi-component immunoaffinity subtraction chromatography: an innovative step towards a comprehensive survey of the human plasma proteome

5 July 2018

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The human plasma proteome: history, character, and diagnostic prospects

5 July 2018

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Hydrophobic ligand binding by Zn-alpha 2-glycoprotein, a soluble fat-depleting factor related to major histocompatibility complex proteins

5 July 2018

1 reference

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Binding of transforming growth factor-beta (TGF-beta) to pregnancy zone protein (PZP). Comparison to the TGF-beta-alpha 2-macroglobulin interaction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2948641

Proteomic analysis of human plasma proteins by two-dimensional gel electrophoresis and by antibody arrays following depletion of high-abundance proteins.

5 July 2018

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Integrated pipeline for mass spectrometry-based discovery and confirmation of biomarkers demonstrated in a mouse model of breast cancer.

28 October 2018

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Differences among techniques for high-abundant protein depletion

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2948641

Depletion of multiple high-abundance proteins improves protein profiling capacities of human serum and plasma.

28 October 2018

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Immunoaffinity separation of plasma proteins by IgY microbeads: meeting the needs of proteomic sample preparation and analysis

28 October 2018

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Automation of nanoscale microcapillary liquid chromatography-tandem mass spectrometry with a vented column

28 October 2018

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Head-to-Head Comparison of Serum Fractionation Techniques

28 October 2018

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Correlation of Relative Abundance Ratios Derived from Peptide Ion Chromatograms and Spectrum Counting for Quantitative Proteomic Analysis Using Stable Isotope Labeling

28 October 2018

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Different immunoaffinity fractionation strategies to characterize the human plasma proteome

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20677825

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Depletion efficiency and recovery of trace markers from a multiparameter immunodepletion column

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20677825

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

[The effect of certain glucides and polyelectrolytes on the combination of hemoglobin with serum haptoglobin and on its catalytic activity]

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20677825

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/PR100646W

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20677825%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20677825%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

1 reference