Cryptococcus gattii in North American Pacific Northwest: whole-population genome analysis provides insights into species evolution and dispersal (Q34165445)

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English	Cryptococcus gattii in North American Pacific Northwest: whole-population genome analysis provides insights into species evolution and dispersal	scientific article

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scholarly article

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Europe PubMed Central

31 July 2017

Cryptococcus gattii in North American Pacific Northwest: whole-population genome analysis provides insights into species evolution and dispersal (English)

1 reference

Europe PubMed Central

31 July 2017

Cryptococcus gattii

1 reference

based on heuristic

inferred from title

biological dispersal

1 reference

based on heuristic

inferred from title

18

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12 June 2020

Matthew C. Fisher

20

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12 June 2020

Carolina Firacative

10

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12 June 2020

Márcia S C Melhem

14

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12 June 2020

17

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12 June 2020

19

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12 June 2020

24

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12 June 2020

David M Engelthaler

1

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David M Engelthaler

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12 June 2020

Popchai Ngamskulrungroj

11

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Popchai Ngamskulrungroj

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12 June 2020

Gavin A Huttley

16

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Gavin Huttley

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12 June 2020

Shawn R Lockhart

22

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Shawn R Lockhart

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12 June 2020

Luciana Trilles

9

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Luciana Trilles

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12 June 2020

23

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Paul Keim

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12 June 2020

author name string

Nathan D Hicks

2

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12 June 2020

John D Gillece

3

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12 June 2020

Chandler C Roe

4

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12 June 2020

James M Schupp

5

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12 June 2020

Elizabeth M Driebe

6

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12 June 2020

Felix Gilgado

7

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12 June 2020

Fabian Carriconde

8

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12 June 2020

Elizabeth Castañeda

12

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12 June 2020

Marcia dos Santos Lazera

13

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12 June 2020

Asa Pérez-Bercoff

15

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12 June 2020

George R Thompson

21

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12 June 2020

publication date

15 July 2014

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31 July 2017

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12 June 2020

5

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12 June 2020

e01464-14

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12 June 2020

4

1 reference

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12 June 2020

Ancient dispersal of the human fungal pathogen Cryptococcus gattii from the Amazon rainforest

1 reference

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Rapid and robust phylotyping of spa t003, a dominant MRSA clone in Luxembourg and other European countries

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Molecular epidemiology reveals genetic diversity amongst isolates of the Cryptococcus neoformans/C. gattii species complex in Thailand

1 reference

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Evolution of a pathogen: a comparative genomics analysis identifies a genetic pathway to pathogenesis in Acinetobacter

1 reference

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Cryptococcus gattii, no longer an accidental pathogen?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

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Whole genome sequence typing to investigate the Apophysomyces outbreak following a tornado in Joplin, Missouri, 2011

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jModelTest 2: more models, new heuristics and parallel computing

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The wood rot ascomycete Xylaria polymorpha produces a novel GH78 glycoside hydrolase that exhibits α-L-rhamnosidase and feruloyl esterase activities and releases hydroxycinnamic acids from lignocelluloses

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5 July 2018

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

1 reference

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5 July 2018

Inference of population structure using dense haplotype data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

Whole genome sequence analysis of Cryptococcus gattii from the Pacific Northwest reveals unexpected diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

1 reference

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

1 reference

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96-plex molecular barcoding for the Illumina Genome Analyzer

1 reference

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5 July 2018

Clonality and α-a recombination in the Australian Cryptococcus gattii VGII population--an emerging outbreak in Australia

1 reference

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Population genomics and local adaptation in wild isolates of a model microbial eukaryote

1 reference

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5 July 2018

Cryptococcus gattii virulence composite: candidate genes revealed by microarray analysis of high and less virulent Vancouver island outbreak strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

Mitochondria and the regulation of hypervirulence in the fatal fungal outbreak on Vancouver Island

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

Comparative genomics and the evolution of pathogenicity in human pathogenic fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

A 32-kilodalton hydrolase plays an important role in Paracoccidioides brasiliensis adherence to host cells and influences pathogenicity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

Search and clustering orders of magnitude faster than BLAST

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

Emergence and pathogenicity of highly virulent Cryptococcus gattii genotypes in the northwest United States

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

Genetic diversity of the Cryptococcus species complex suggests that Cryptococcus gattii deserves to have varieties.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

Consensus multi-locus sequence typing scheme for Cryptococcus neoformans and Cryptococcus gattii

1 reference

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5 July 2018

Molecular evidence that the range of the Vancouver Island outbreak of Cryptococcus gattii infection has expanded into the Pacific Northwest in the United States

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5 July 2018

Emergence of Cryptococcus gattii in a novel environment provides clues to its incubation period

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5 July 2018

A simple and robust statistical test for detecting the presence of recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

Application of phylogenetic networks in evolutionary studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

The DEAD-box RNA helicase Vad1 regulates multiple virulence-associated genes in Cryptococcus neoformans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

A rare genotype of Cryptococcus gattii caused the cryptococcosis outbreak on Vancouver Island (British Columbia, Canada)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

Neighbor-net: an agglomerative method for the construction of phylogenetic networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

Recapitulation of the sexual cycle of the primary fungal pathogen Cryptococcus neoformans var. gattii: implications for an outbreak on Vancouver Island, Canada

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

BLAT—The BLAST-Like Alignment Tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

Possible primary ecological niche of Cryptococcus neoformans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

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1 reference

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1 reference

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5 July 2018

High prevalence of Cryptococcus neoformans var. gattii in tropical and subtropical regions

1 reference

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5 July 2018

Lung collagen: more than scaffolding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

Natural habitat of Cryptococcus neoformans var. gattii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

5 July 2018

Unisexual reproduction enhances fungal competitiveness by promoting habitat exploration via hyphal growth and sporulation

1 reference

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28 October 2018

First environmental isolation of Cryptococcus gattii serotype B, from Cúcuta, Colombia.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4161256

28 October 2018

Identification of novel hybrids between Cryptococcus neoformans var. grubii VNI and Cryptococcus gattii VGII.

1 reference

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28 October 2018

Cryptococcus gattii in the United States: clinical aspects of infection with an emerging pathogen.

1 reference

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28 October 2018

Using native and syntenically mapped cDNA alignments to improve de novo gene finding.

1 reference

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28 October 2018

Ecological niche of Cryptococcus neoformans var. grubii and Cryptococcus gattii in decaying wood of trunk hollows of living trees in Jabalpur City of Central India.

1 reference

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28 October 2018

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1 reference

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28 October 2018

Recent evolution of the human pathogen Cryptococcus neoformans by intervarietal transfer of a 14-gene fragment

1 reference

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28 October 2018

Global VGIIa isolates are of comparable virulence to the major fatal Cryptococcus gattii Vancouver Island outbreak genotype

1 reference

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28 October 2018

Molecular epidemiology of clinical and environmental isolates of theCryptococcus neoformansspecies complex reveals a high genetic diversity and the presence of the molecular type VGII mating type a in Colombia

1 reference

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28 October 2018

Same-sex mating and the origin of the Vancouver Island Cryptococcus gattii outbreak

1 reference

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28 October 2018

Matrix metalloproteinases with gelatinolytic activity induced by Paracoccidioides brasiliensis infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/25028429

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

[Optimization of cultivation conditions of Cryptococcus albidus--producers of alpha-L-rhamnosidase]

1 reference

https://pubmed.ncbi.nlm.nih.gov/25028429

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Haploid fruiting in Cryptococcus neoformans is not mating type alpha-specific

1 reference

https://pubmed.ncbi.nlm.nih.gov/25028429

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

[First isolation of Cryptococcus gattii from the environment in the State of Espírito Santo]

1 reference

https://pubmed.ncbi.nlm.nih.gov/25028429

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

First isolation of Cryptococcus neoformans var. gattii from a native jungle tree in the Brazilian Amazon rainforest

1 reference

https://pubmed.ncbi.nlm.nih.gov/25028429

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/MBIO.01464-14

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25028429%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25028429%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25028429%20AND%20SRC:MED&resulttype=core&format=json

12 June 2020

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