Hydrophobic, Non-Hydrogen-Bonding Bases and Base Pairs in DNA. (Q34157403)

31 July 2017

Hydrophobic, Non-Hydrogen-Bonding Bases and Base Pairs in DNA. (English)

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31 July 2017

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2

Eric T Kool

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31 July 2017

Barbara A Schweitzer

1

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PubMed ID

20882111

31 July 2017

language of work or name

English

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publication date

1 February 1995

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Journal of the American Chemical Society

31 July 2017

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31 July 2017

117

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31 July 2017

7

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31 July 2017

1863-1872

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An optimized potential function for the calculation of nucleic acid interaction energies I. base stacking

31 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2946113

Aromatic Nonpolar Nucleosides as Hydrophobic Isosteres of Pyrimidine and Purine Nucleosides

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2946113

Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2946113

5-Nitroindole as an universal base analogue

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2946113

Synthesis and biophysical studies of short oligodeoxynucleotides with novel modifications: a possible approach to the problem of mixed base oligodeoxynucleotide synthesis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2946113

5 July 2018

Protein-DNA recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2946113

Hydrogen Ion Buffers for Biological Research*

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2946113

Base-base mismatches. Thermodynamics of double helix formation for dCA3XA3G + dCT3YT3G (X, Y = A,C,G,T).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2946113

Predicting DNA duplex stability from the base sequence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2946113

Hydrophobic interactions in the major groove can influence DNA local structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2946113

Origin of DNA helical structure and its sequence dependence

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2946113

Contributions of hydrogen bonds of Thr 157 to the thermodynamic stability of phage T4 lysozyme

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2946113

The electrostatic contribution to DNA base-stacking interactions.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2946113

Ribosome-mediated incorporation of a non-standard amino acid into a peptide through expansion of the genetic code

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2946113

Hydration of DNA bases: analysis of crystallographic data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2946113

Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2946113

Synthesis and biological activity of 4-(.beta.-D-ribofuranosyl)-1,3-dihydroxybenzene (1,3-dideazauridine)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2946113

A universal nucleoside for use at ambiguous sites in DNA primers.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2946113

Stabilities of consecutive A.C, C.C, G.G, U.C, and U.U mismatches in RNA internal loops: Evidence for stable hydrogen-bonded U.U and C.C.+ pairs

28 October 2018

1 reference

12 December 2020

Base-stacking and base-pairing contributions to helix stability: thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp

1 reference

12 December 2020

Pyrimidine.pyrimidine base-pair mismatches in DNA. A nuclear magnetic resonance study of T.T pairing at neutral pH and C.C pairing at acidic pH in dodecanucleotide duplexes

1 reference

12 December 2020

An Infrared Study of Hydrogen Bonding between Adenine and Uracil Derivatives in Chloroform Solution

1 reference

12 December 2020

Solvent effects on dinucleotide conformation

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12 December 2020

Protein-DNA recognition: new perspectives and underlying themes

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12 December 2020

Base sequence effects in double-helical DNA. III. Average properties of curved DNA

1 reference

12 December 2020

Influence of dangling thymidine residues on the stability and structure of two DNA duplexes

1 reference

12 December 2020

Two-dimensional 1H and 31P NMR spectra and restrained molecular dynamics structure of a mismatched GA decamer oligodeoxyribonucleotide duplex

1 reference

12 December 2020

Nucleosides. LXXIII. Ribosyl analogs of chloramphenicol

1 reference

12 December 2020

Solvent-accessible surfaces of nucleic acids

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12 December 2020

Sequence-dependent DNA structure. The role of base stacking interactions

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12 December 2020

Base sequence effects in double-helical DNA. II. Configurational statistics of rodlike chains

1 reference

12 December 2020

Identifiers

DOI

10.1021/JA00112A001

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31 July 2017

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31 July 2017

1 reference

PubMed ID

20882111