Heterochronic evolution reveals modular timing changes in budding yeast transcriptomes (Q34145252)

31 July 2017

Heterochronic evolution reveals modular timing changes in budding yeast transcriptomes (English)

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31 July 2017

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Daniel F Simola

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31 July 2017

Chantal Francis

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31 July 2017

Paul D Sniegowski

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31 July 2017

Junhyong Kim

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31 July 2017

22 October 2010

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31 July 2017

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31 July 2017

11

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31 July 2017

10

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31 July 2017

R105

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https://scigraph.springernature.com/pub.10.1186/gb-2010-11-10-r105

31 July 2017

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cites work

Global coordination of transcriptional control and mRNA decay during cellular differentiation

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Natural selection on cis and trans regulation in yeasts

5 July 2018

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Regulatory divergence in Drosophila revealed by mRNA-seq.

5 July 2018

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Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species

5 July 2018

1 reference

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Roles of trans and cis variation in yeast intraspecies evolution of gene expression

5 July 2018

1 reference

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Transcriptional neoteny in the human brain

5 July 2018

1 reference

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The impact of genomic neighborhood on the evolution of human and chimpanzee transcriptome

5 July 2018

1 reference

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Roles of cis- and trans-changes in the regulatory evolution of genes in the gluconeogenic pathway in yeast

5 July 2018

1 reference

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Epigenetic regulation and the variability of gene expression

5 July 2018

1 reference

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Predicting gene expression from sequence: a reexamination

5 July 2018

1 reference

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Divergence of transcription factor binding sites across related yeast species

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Expression evolution in yeast genes of single-input modules is mainly due to changes in trans-acting factors

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Heterochronic Genes and the Nature of Developmental Time

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Genetic properties influencing the evolvability of gene expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Relative impact of nucleotide and copy number variation on gene expression phenotypes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Co-evolution of transcriptional and post-translational cell-cycle regulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Using heterochrony to detect modularity in the evolution of stem diversity in the plant family moringaceae.

5 July 2018

1 reference

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An improved map of conserved regulatory sites for Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Dynamic properties of network motifs contribute to biological network organization

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Genomic analysis of regulatory network dynamics reveals large topological changes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Transcriptional regulatory code of a eukaryotic genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Transcriptional disruption by the L1 retrotransposon and implications for mammalian transcriptomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

The yeast cell-cycle network is robustly designed

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Transcriptional regulatory networks in Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Reverse engineering of biological complexity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Constraint structure analysis of gene expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Serial regulation of transcriptional regulators in the yeast cell cycle

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Estimates of the rate and distribution of fitness effects of spontaneous mutation in Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Functional discovery via a compendium of expression profiles

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Molecular heterochrony in the early development of Drosophila

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Understanding modularity in molecular networks requires dynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

A yeast hybrid provides insight into the evolution of gene expression regulation.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Regulatory changes underlying expression differences within and between Drosophila species.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

A mutation accumulation assay reveals a broad capacity for rapid evolution of gene expression.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Evolutionary changes in cis and trans gene regulation

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Predicting gene expression from sequence.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Saccharomyces cerevisiae and Saccharomyces paradoxus coexist in a natural woodland site in North America and display different levels of reproductive isolation from European conspecifics

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

The naturalist in a world of genomics.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Evolution of gene expression in the Drosophila melanogaster subgroup.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218661

Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors

28 October 2018

1 reference

12 December 2020

The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans

1 reference

12 December 2020

Systems biology spins off a new model for the study of canalization

1 reference

12 December 2020

PERSPECTIVE: COMPLEX ADAPTATIONS AND THE EVOLUTION OF EVOLVABILITY.

1 reference

12 December 2020

HIERARCHICAL COMPARISON OF GENETIC VARIANCE-COVARIANCE MATRICES. I. USING THE FLURY HIERARCHY

1 reference

12 December 2020

ADAPTIVE RADIATION ALONG GENETIC LINES OF LEAST RESISTANCE.

1 reference

12 December 2020

10.1186/GB-2010-11-10-R105

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31 July 2017

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31 July 2017

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