Global transgenerational gene expression dynamics in two newly synthesized allohexaploid wheat (Triticum aestivum) lines (Q34141019)

31 July 2017

Global transgenerational gene expression dynamics in two newly synthesized allohexaploid wheat (Triticum aestivum) lines (English)

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31 July 2017

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Chunming Xu

7

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author name string

Bao Qi

1

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31 July 2017

Wei Huang

2

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31 July 2017

Bo Zhu

3

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31 July 2017

Xiaofang Zhong

4

1 reference

31 July 2017

Jianhua Guo

5

1 reference

31 July 2017

Na Zhao

6

1 reference

31 July 2017

Huakun Zhang

8

1 reference

31 July 2017

Jinsong Pang

9

1 reference

31 July 2017

Fangpu Han

10

1 reference

31 July 2017

Bao Liu

11

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31 July 2017

26 January 2012

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31 July 2017

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31 July 2017

10

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31 July 2017

3

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describes a project that uses

31 July 2017

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/3313882

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1741-7007-10-3

0 references

cites work

Homoeolog-specific transcriptional bias in allopolyploid wheat

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agriGO: a GO analysis toolkit for the agricultural community

5 July 2018

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Genomic and expression plasticity of polyploidy

5 July 2018

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Order out of chaos in the hybrid plant nucleus

5 July 2018

1 reference

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Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation.

5 July 2018

1 reference

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Homoeologous recombination in allopolyploids: the polyploid ratchet

5 July 2018

1 reference

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Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids

5 July 2018

1 reference

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Genome evolution in allopolyploid wheat--a revolutionary reprogramming followed by gradual changes

5 July 2018

1 reference

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The role of hybridization in plant speciation

5 July 2018

1 reference

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Comparative transcriptomics in the Triticeae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Transcriptional profiling in response to terminal drought stress reveals differential responses along the wheat genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Genomic expression dominance in allopolyploids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (gossypium)

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Nonadditive expression of homoeologous genes is established upon polyploidization in hexaploid wheat

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Evolutionary genetics of genome merger and doubling in plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Genomic clues to the evolutionary success of polyploid plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

The evolutionary consequences of polyploidy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Genome plasticity a key factor in the success of polyploid wheat under domestication

5 July 2018

1 reference

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Phenotypic and transcriptomic changes associated with potato autopolyploidization

5 July 2018

1 reference

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Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids

5 July 2018

1 reference

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Evolution of duplicate gene expression in polyploid and hybrid plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Numerous and rapid nonstochastic modifications of gene products in newly synthesized Brassica napus allotetraploids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Mechanisms of genomic rearrangements and gene expression changes in plant polyploids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

The advantages and disadvantages of being polyploid

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Genomewide nonadditive gene regulation in Arabidopsis allotetraploids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Allele-specific, bidirectional silencing of an alcohol dehydrogenase gene in different organs of interspecific diploid cotton hybrids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Allopolyploidy--a shaping force in the evolution of wheat genomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Polyploidy and genome evolution in plants

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

The significance of responses of the genome to challenge

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Genomic changes in synthetic Arabidopsis polyploids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Understanding mechanisms of novel gene expression in polyploids

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Genetics and geography of wild cereal domestication in the near east.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Genome evolution in polyploids

5 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

5 July 2018

https://api.crossref.org/works/10.1186%2F1741-7007-10-3

Rapid elimination of low-copy DNA sequences in polyploid wheat: a possible mechanism for differentiation of homoeologous chromosomes

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Transcriptional analysis of nucleolar dominance in polyploid plants: biased expression/silencing of progenitor rRNA genes is developmentally regulated in Brassica

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina.

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1741-7007-10-3

Polyploid formation in cotton is not accompanied by rapid genomic changes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1741-7007-10-3

Newly synthesized wheat allohexaploids display progenitor-dependent meiotic stability and aneuploidy but structural genomic additivity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1741-7007-10-3

Coordinated and fine-scale control of homoeologous gene expression in allotetraploid cotton

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1741-7007-10-3

Transcriptomic changes following recent natural hybridization and allopolyploidy in the salt marsh species Spartina x townsendii and Spartina anglica (Poaceae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1741-7007-10-3

Genomic constitution and variation in five partial amphiploids of wheat--Thinopyrum intermedium as revealed by GISH, multicolor GISH and seed storage protein analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1741-7007-10-3

A yeast hybrid provides insight into the evolution of gene expression regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1741-7007-10-3

Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae).

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3313882

Homoeologous gene silencing in hexaploid wheat

28 October 2018

1 reference

12 December 2020

Effects of reunited diverged regulatory hierarchies in allopolyploids and species hybrids

1 reference

12 December 2020

Genome-wide gene expression changes in genetically stable synthetic and natural wheat allohexaploids

1 reference

12 December 2020

Transcriptome shock after interspecific hybridization in senecio is ameliorated by genome duplication

1 reference

12 December 2020

Retrotransposons and genomic stability in populations of the young allopolyploid species Spartina anglica C.E. Hubbard (Poaceae)

1 reference

12 December 2020

Genetic control of chromosome pairing in wheat

1 reference

12 December 2020

Tissue-specific silencing of homoeologs in natural populations of the recent allopolyploid Tragopogon mirus

1 reference

12 December 2020

The origin of Triticum spelta and its free-threshing hexaploid relatives

1 reference

12 December 2020

Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. II. Changes in low-copy coding DNA sequences

1 reference

12 December 2020

Identifiers

DOI

10.1186/1741-7007-10-3

1 reference

Dimensions Publication ID

31 July 2017

0 references

1 reference

31 July 2017

1 reference