2011 German Escherichia coli O104:H4 outbreak: whole-genome phylogeny without alignment. (Q34100031)

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18 January 2020

title

2011 German Escherichia coli O104:H4 outbreak: whole-genome phylogeny without alignment (English)

1 reference

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18 January 2020

1 reference

1 reference

whole genome sequencing

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4

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18 January 2020

Man Kit Cheung

1

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author name string

Lei Li

series ordinal

2

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18 January 2020

Wenyan Nong

series ordinal

3

1 reference

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18 January 2020

publication date

13 December 2011

1 reference

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18 January 2020

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18 January 2020

volume

4

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18 January 2020

page(s)

533

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https://scigraph.springernature.com/pub.10.1186/1756-0500-4-533

18 January 2020

exact match

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cites work

Next generation sequencing has lower sequence coverage and poorer SNP-detection capability in the regulatory regions

1 reference

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Presence of enterohemorrhagic Escherichia coli ST678/O104:H4 in France prior to 2011

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280199

5 July 2018

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Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280199

Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280199

Open-Source Genomic Analysis of Shiga-Toxin–Producing E. coli O104:H4

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280199

Genome sequence analyses of two isolates from the recent Escherichia coli outbreak in Germany reveal the emergence of a new pathotype: Entero-Aggregative-Haemorrhagic Escherichia coli (EAHEC)

5 July 2018

1 reference

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Characterisation of the Escherichia coli strain associated with an outbreak of haemolytic uraemic syndrome in Germany, 2011: a microbiological study

5 July 2018

1 reference

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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

5 July 2018

1 reference

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Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs)

5 July 2018

1 reference

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Whole-genome phylogeny of mammals: evolutionary information in genic and nongenic regions

5 July 2018

1 reference

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Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions

5 July 2018

1 reference

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Analysis of collection of hemolytic uremic syndrome-associated enterohemorrhagic Escherichia coli

5 July 2018

1 reference

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Confirming the phylogeny of mammals by use of large comparative sequence data sets

5 July 2018

1 reference

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VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics

5 July 2018

1 reference

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A case of hemolytic uremic syndrome caused by Escherichia coli O104:H4

5 July 2018

1 reference

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Pathogenic Escherichia coli

5 July 2018

1 reference

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Chronic diarrhea, hemorrhagic colitis, and hemolytic-uremic syndrome associated with HEp-2 adherent Escherichia coli in adults infected with human immunodeficiency virus in Bangui, Central African Republic

5 July 2018

1 reference

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Molecular archaeology of the Escherichia coli genome

5 July 2018

1 reference

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Escherichia coli O104:H4 from 2011 European outbreak and strain from South Korea

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3280199

28 October 2018

Identifiers

DOI

10.1186/1756-0500-4-533

1 reference

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Dimensions Publication ID

18 January 2020

0 references

1 reference

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18 January 2020

PubMed publication ID

22166159

1 reference