Next generation sequencing-based analysis of repetitive DNA in the model dioecious [corrected] plant Silene latifolia (Q34077829)

30 July 2017

Next generation sequencing-based analysis of repetitive DNA in the model dioecious [corrected] plant Silene latifolia (English)

1 reference

30 July 2017

Silene latifolia

1 reference

1 reference

Pavel Neumann

3

0 references

Petr Novak

object named as

Petr Novák

4

1 reference

ORCID Public Data File 2021

Boris Vyskot

6

object named as

Boris Vyskot

1 reference

30 July 2017

Jiří Macas

1

1 reference

30 July 2017

Eduard Kejnovský

2

1 reference

30 July 2017

Andrea Koblížková

5

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30 July 2017

language of work or name

English

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publication date

9 November 2011

1 reference

30 July 2017

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30 July 2017

6

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30 July 2017

e27335

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30 July 2017

11

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Creative Commons Attribution 4.0 International

30 July 2017

start time

9 November 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Sequence-specific error profile of Illumina sequencers

5 July 2018

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Artificial duplicate reads in sequencing data of 454 Genome Sequencer FLX System

5 July 2018

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Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

5 July 2018

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Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians

5 July 2018

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The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

5 July 2018

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Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing

5 July 2018

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Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.

5 July 2018

1 reference

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Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Silene latifolia: the classical model to study heteromorphic sex chromosomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

High-throughput DNA sequencing--concepts and limitations

5 July 2018

1 reference

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SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building

5 July 2018

1 reference

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The role of repetitive DNA in structure and evolution of sex chromosomes in plants.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Recent spread of a retrotransposon in the Silene latifolia genome, apart from the Y chromosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

The Y chromosome-specific STS marker MS2 and its peripheral regions on the Y chromosome of the dioecious plant Silene latifolia

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Transposable element distribution, abundance and role in genome size variation in the genus Oryza

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Ogre elements--a distinct group of plant Ty3/gypsy-like retrotransposons

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Accumulation of chloroplast DNA sequences on the Y chromosome of Silene latifolia.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Significant expansion of Vicia pannonica genome size mediated by amplification of a single type of giant retroelement

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

MUSCLE: multiple sequence alignment with high accuracy and high throughput

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Multicolor FISH mapping of the dioecious model plant, Silene latifolia.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Sequence subfamilies of satellite repeats related to rDNA intergenic spacer are differentially amplified on Vicia sativa chromosomes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Distribution of interstitial telomere-like repeats and their adjacent sequences in a dioecious plant, Silene latifolia.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Heterogeneity of rDNA distribution and genome size in Silene spp.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Comparison of DNA sequences with protein sequences.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Isolation and characterization of X chromosome-derived DNA sequences from a dioecious plant Melandrium album.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Accumulation of Y-specific satellite DNAs during the evolution of Rumex acetosa sex chromosomes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

PatMaN: rapid alignment of short sequences to large databases

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Microsatellite accumulation on the Y chromosome in Silene latifolia.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

The role of chromosomal rearrangements in the evolution of Silene latifolia sex chromosomes.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

The clustering of four subfamilies of satellite DNA at individual chromosome ends in Silene latifolia.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

Characterization of telomere-subtelomere junctions in Silene latifolia.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212565

An accumulation of tandem DNA repeats on the Y chromosome in Silene latifolia during early stages of sex chromosome evolution

28 October 2018

1 reference

12 December 2020

Transition between two forms of heterochromatin at plant subtelomeres

1 reference

12 December 2020

Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived Repetitive DNAs

1 reference

12 December 2020

Instability of bacterial artificial chromosome (BAC) clones containing tandemly repeated DNA sequences

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0027335

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DOI

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release_ubldhcj4unaq7fr2zb6ygxdp2q

30 July 2017

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24 November 2022

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3212565

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30 July 2017

1 reference