Biological role of noise encoded in a genetic network motif (Q34067922)

30 July 2017

Biological role of noise encoded in a genetic network motif (English)

1 reference

30 July 2017

Mark Kittisopikul

1

1 reference

PubMed ID

20616054

30 July 2017

Gürol M Süel

series ordinal

2

1 reference

PubMed ID

20616054

30 July 2017

language of work or name

English

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publication date

28 June 2010

1 reference

Proceedings of the National Academy of Sciences of the United States of America

30 July 2017

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30 July 2017

107

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30 July 2017

30

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30 July 2017

13300-13305

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Transcriptional regulatory circuits: predicting numbers from alphabets

30 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Kinetics of genetic switching into the state of bacterial competence.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Quantitative transcription factor binding kinetics at the single-molecule level

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

A simple screen to identify promoters conferring high levels of phenotypic noise

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Regulatory activity revealed by dynamic correlations in gene expression noise

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

EcoCyc: a comprehensive view of Escherichia coli biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Stochastic switching to competence.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

A stochastic single-molecule event triggers phenotype switching of a bacterial cell

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Nonidentifiability of the source of intrinsic noise in gene expression from single-burst data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

A genetic timer through noise-induced stabilization of an unstable state.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Frequency-modulated nuclear localization bursts coordinate gene regulation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Robust, tunable biological oscillations from interlinked positive and negative feedback loops.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Role of global regulators and nucleotide metabolism in antibiotic tolerance in Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Colored extrinsic fluctuations and stochastic gene expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Molecular level stochastic model for competence cycles in Bacillus subtilis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Noise in gene expression determines cell fate in Bacillus subtilis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Network motifs: theory and experimental approaches

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Tunability and noise dependence in differentiation dynamics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Stochastic simulation of chemical kinetics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

An excitable gene regulatory circuit induces transient cellular differentiation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

The incoherent feed-forward loop accelerates the response-time of the gal system of Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Real-time kinetics of gene activity in individual bacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Topology of biological networks and reliability of information processing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Diversity in times of adversity: probabilistic strategies in microbial survival games

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Bacterial persistence as a phenotypic switch

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Stochastic gene expression in fluctuating environments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Structure and function of the feed-forward loop network motif

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Design principles for elementary gene circuits: Elements, methods, and examples

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Network motifs: simple building blocks of complex networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Regulation of noise in the expression of a single gene

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Demand theory of gene regulation. II. Quantitative application to the lactose and maltose operons of Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Demand theory of gene regulation. I. Quantitative development of the theory.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

Fosfomycin resistance plasmids do not affect fosfomycin transport into Escherichia coli.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2922135

A fast, robust and tunable synthetic gene oscillator.

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003975107

Architecture-dependent noise discriminates functionally analogous differentiation circuits.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003975107

Distinctive topologies of partner-switching signaling networks correlate with their physiological roles

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003975107

Design principles for regulator gene expression in a repressible gene circuit

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003975107

Self-regulating gene: an exact solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003975107

Understanding stochastic simulations of the smallest genetic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003975107

Probing gene expression in live cells, one protein molecule at a time.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003975107

Noise characteristics of feed forward loops.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003975107

Stochastic switching as a survival strategy in fluctuating environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003975107

FANMOD: a tool for fast network motif detection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003975107

Exact stochastic simulation of coupled chemical reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003975107

Design principles of a bacterial signalling network

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1003975107

21 January 2018

Identifiers

DOI

10.1073/PNAS.1003975107

1 reference

30 July 2017

0 references

1 reference

30 July 2017

1 reference

PubMed ID

20616054