Classification of multi-helical DNA-binding domains and application to predict the DBD structures of sigma factor, LysR, OmpR/PhoB, CENP-B, Rapl, and Xy1S/Ada/AraC. (Q34057931)

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English	Classification of multi-helical DNA-binding domains and application to predict the DBD structures of sigma factor, LysR, OmpR/PhoB, CENP-B, Rapl, and Xy1S/Ada/AraC.	scientific article

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scholarly article

1 reference

Europe PubMed Central

30 July 2017

Classification of multi-helical DNA-binding domains and application to predict the DBD structures of sigma factor, LysR, OmpR/PhoB, CENP-B, Rapl, and Xy1S/Ada/AraC. (English)

1 reference

Europe PubMed Central

30 July 2017

Steven E. Brenner

2

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Brenner SE

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Europe PubMed Central

30 July 2017

author name string

Suzuki M

1

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Europe PubMed Central

30 July 2017

language of work or name

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publication date

1 September 1995

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Europe PubMed Central

30 July 2017

number of pages

7

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inferred from page(s)

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Europe PubMed Central

30 July 2017

372

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Europe PubMed Central

30 July 2017

215-221

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Europe PubMed Central

30 July 2017

2-3

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Europe PubMed Central

30 July 2017

A structural taxonomy of DNA-binding domains

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DNA recognition by proteins with the helix-turn-helix motif

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Structural determinants of nuclear receptor assembly on DNA direct repeats

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DNA recognition by GAL4: structure of a protein-DNA complex.

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The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted alpha helices: crystal structure of the protein-DNA complex

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Crystal structure at 1.7 A of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target

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Protein-DNA recognition

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Structure of the cro repressor from bacteriophage lambda and its interaction with DNA.

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Hin recombinase bound to DNA: the origin of specificity in major and minor groove interactions

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The Protein Data Bank: a computer-based archival file for macromolecular structures

1 reference

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Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

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RASMOL: biomolecular graphics for all

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Structure and function of bacterial sigma factors

1 reference

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The sigma 70 family: sequence conservation and evolutionary relationships

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skn-1, a maternally expressed gene required to specify the fate of ventral blastomeres in the early C. elegans embryo

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Nucleotide sequence of the phoB gene, the positive regulatory gene for the phosphate regulon of Escherichia coli K-12.

1 reference

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The operator-binding domain of lambda repressor: structure and DNA recognition

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The DNA binding arm of lambda repressor: critical contacts from a flexible region

1 reference

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Structure of phage 434 Cro protein at 2.35 A resolution

1 reference

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Crystal structure of a MAT alpha 2 homeodomain-operator complex suggests a general model for homeodomain-DNA interactions

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The phage 434 Cro/OR1 complex at 2.5 A resolution

1 reference

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Determination of the nuclear magnetic resonance solution structure of the DNA-binding domain (residues 1 to 69) of the 434 repressor and comparison with the X-ray crystal structure

1 reference

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Structure of the amino-terminal domain of phage 434 repressor at 2.0 A resolution

1 reference

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Structure of the repressor-operator complex of bacteriophage 434.

1 reference

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The complex between phage 434 repressor DNA-binding domain and operator site OR3: structural differences between consensus and non-consensus half-sites

1 reference

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The phage 434 OR2/R1-69 complex at 2.5 A resolution

1 reference

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Determination of the nuclear magnetic resonance solution structure of an Antennapedia homeodomain-DNA complex

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Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees

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Solution structure of the ets domain of Fli-1 when bound to DNA

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Structure of the complex of lac repressor headpiece and an 11 base-pair half-operator determined by nuclear magnetic resonance spectroscopy and restrained molecular dynamics

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Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices

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1 reference

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The solution structure of the Oct-1 POU-specific domain reveals a striking similarity to the bacteriophage lambda repressor DNA-binding domain

1 reference

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Crystal structure of the Oct-1 POU domain bound to an octamer site: DNA recognition with tethered DNA-binding modules

1 reference

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Determination of the nuclear magnetic resonance structure of the DNA-binding domain of the P22 c2 repressor (1 to 76) in solution and comparison with the DNA-binding domain of the 434 repressor

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The solution structures of the trp repressor-operator DNA complex

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10.1016/0014-5793(95)00988-L

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Europe PubMed Central

30 July 2017

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Europe PubMed Central

30 July 2017

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