Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales (Q34057523)

30 July 2017

Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales (English)

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30 July 2017

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Danilo Pérez-Pantoja

1

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30 July 2017

Raúl Donoso

2

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30 July 2017

Loreine Agulló

3

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30 July 2017

Macarena Córdova

4

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30 July 2017

Michael Seeger

5

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30 July 2017

Dietmar H Pieper

6

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30 July 2017

Bernardo González

7

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30 July 2017

26 October 2011

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Environmental Microbiology

30 July 2017

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30 July 2017

14

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30 July 2017

5

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30 July 2017

1091-1117

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ProtTest: selection of best-fit models of protein evolution

30 July 2017

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Genome sequence of the beta-rhizobium Cupriavidus taiwanensis and comparative genomics of rhizobia

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

The homogentisate pathway: a central catabolic pathway involved in the degradation of L-phenylalanine, L-tyrosine, and 3-hydroxyphenylacetate in Pseudomonas putida

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

A two-component hydroxylase involved in the assimilation of 3-hydroxyphenyl acetate in Pseudomonas putida

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

The role of root exudates in rhizosphere interactions with plants and other organisms

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Flavoprotein monooxygenases, a diverse class of oxidative biocatalysts

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Phenol hydroxylase and toluene/o-xylene monooxygenase from Pseudomonas stutzeri OX1: interplay between two enzymes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

(+)-γ-Carboxymethyl-γ-methyl-Δα-butenolide. A 1,2 ring-fission product of 4-methylcatechol by Pseudomonas desmolyticum

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Examination and expansion of the substrate range of m-hydroxybenzoate hydroxylase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Burkholderia cepacia complex species: health hazards and biotechnological potential.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Degradation of homogentisate by strains of Bacillus and Moraxella

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Identification of in situ 2,4-dichlorophenoxyacetic acid-degrading soil microorganisms using DNA-stable isotope probing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Bacteria subsisting on antibiotics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Microbial relatives of the seed storage proteins of higher plants: conservation of structure and diversification of function during evolution of the cupin superfamily

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

The pca-pob supraoperonic cluster of Acinetobacter calcoaceticus contains quiA, the structural gene for quinate-shikimate dehydrogenase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Evolutionary relationships among extradiol dioxygenases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Characterization of a gene cluster from Ralstonia eutropha JMP134 encoding metabolism of 4-methylmuconolactone

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Mechanism of aromatic amino acid hydroxylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Characterization of the isophthalate degradation genes of Comamonas sp. strain E6.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Aromatic hydrocarbon dioxygenases in environmental biotechnology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Regulation of phenylacetic acid degradation genes of Burkholderia cenocepacia K56-2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

The meta cleavage operon of TOL degradative plasmid pWW0 comprises 13 genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Roles of the divergent branches of the meta-cleavage pathway in the degradation of benzoate and substituted benzoates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Introducing the bacterial 'chromid': not a chromosome, not a plasmid.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

The beta-ketoadipate pathway and the biology of self-identity

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Identification of the pcaRKF gene cluster from Pseudomonas putida: involvement in chemotaxis, biodegradation, and transport of 4-hydroxybenzoate

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Gene cloning and characterization of maleate cis-trans isomerase from Alcaligenes faecalis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Novel pathway of salicylate degradation by Streptomyces sp. strain WA46.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Discovery of a bacterium, with distinctive dioxygenase, that is responsible for in situ biodegradation in contaminated sediment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

The naphthalene catabolic (nag) genes of Polaromonas naphthalenivorans CJ2: evolutionary implications for two gene clusters and novel regulatory control

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

3- and 4-alkylphenol degradation pathway in Pseudomonas sp. strain KL28: genetic organization of the lap gene cluster and substrate specificities of phenol hydroxylase and catechol 2,3-dioxygenase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Characterization of the protocatechuate 4,5-cleavage pathway operon in Comamonas sp. strain E6 and discovery of a novel pathway gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Characterization of the gallate dioxygenase gene: three distinct ring cleavage dioxygenases are involved in syringate degradation by Sphingomonas paucimobilis SYK-6.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Complete genome sequence of Burkholderia rhizoxinica, an Endosymbiont of Rhizopus microsporus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

IslandViewer: an integrated interface for computational identification and visualization of genomic islands

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

A functional phenylacetic acid catabolic pathway is required for full pathogenicity of Burkholderia cenocepacia in the Caenorhabditis elegans host model

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Evolution of the soluble diiron monooxygenases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Gentisate 1,2-dioxygenase, in the third naphthalene catabolic gene cluster of Polaromonas naphthalenivorans CJ2, has a role in naphthalene degradation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Discovery of a bacterial gene cluster for catabolism of the plant hormone indole 3-acetic acid

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Field-based and laboratory stable isotope probing surveys of the identities of both aerobic and anaerobic benzene-metabolizing microorganisms in freshwater sediment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Degradation of aniline by newly isolated, extremely aniline-tolerant Delftia sp. AN3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

The use of stable isotope probing techniques in bioreactor and field studies on bioremediation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Cultivation-independent in situ molecular analysis of bacteria involved in degradation of pentachlorophenol in soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Protocatechuate 4,5-dioxygenase from Comamonas testosteroni T-2: biochemical and molecular properties of a new subgroup within class III of extradiol dioxygenases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Functional and compositional comparison of two activated sludge communities remediating coking effluent.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Structure of bacterial glutathione-S-transferase maleyl pyruvate isomerase and implications for mechanism of isomerisation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

The genome of Polaromonas sp. strain JS666: insights into the evolution of a hydrocarbon- and xenobiotic-degrading bacterium, and features of relevance to biotechnology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

The homogentisate and homoprotocatechuate central pathways are involved in 3- and 4-hydroxyphenylacetate degradation by Burkholderia xenovorans LB400.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Grouping of phenol hydroxylase and catechol 2,3-dioxygenase genes among phenol- and p-cresol-degrading Pseudomonas species and biotypes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

4-Hydroxyphenylpyruvate dioxygenase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Purification and characterization of toluene 2-monooxygenase from Burkholderia cepacia G4

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Molecular cloning of the protocatechuate 4,5-dioxygenase genes of Pseudomonas paucimobilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Molecular characterization of the gallate dioxygenase from Pseudomonas putida KT2440. The prototype of a new subgroup of extradiol dioxygenases

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Unravelling the gallic acid degradation pathway in bacteria: the gal cluster from Pseudomonas putida

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Nucleotide sequences of the meta-cleavage pathway enzymes 2-hydroxymuconic semialdehyde dehydrogenase and 2-hydroxymuconic semialdehyde hydrolase from Pseudomonas CF600.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Biotechnological potential within the genus Burkholderia

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Molecular and biochemical characterization of 3-hydroxybenzoate 6-hydroxylase from Polaromonas naphthalenivorans CJ2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Roles of CatR and cis,cis-muconate in activation of the catBC operon, which is involved in benzoate degradation in Pseudomonas putida

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Genetics and biochemistry of phenol degradation by Pseudomonas sp. CF600.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Comamonas testosteroni BR6020 possesses a single genetic locus for extradiol cleavage of protocatechuate

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Metabolism of isovanillate, vanillate, and veratrate by Comamonas testosteroni strain BR6020.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

The locus coding for the 3-nitrobenzoate dioxygenase of Comamonas sp. strain JS46 is flanked by IS1071 elements and is subject to deletion and inversion events

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Field-based stable isotope probing reveals the identities of benzoic acid-metabolizing microorganisms and their in situ growth in agricultural soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Characterization of the terephthalate degradation genes of Comamonas sp. strain E6.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Cupriavidus pinatubonensis sp. nov. and Cupriavidus laharis sp. nov., novel hydrogen-oxidizing, facultatively chemolithotrophic bacteria isolated from volcanic mudflow deposits from Mt. Pinatubo in the Philippines

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Chemical properties of catechols and their molecular modes of toxic action in cells, from microorganisms to mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Stable-isotope probing of bacteria capable of degrading salicylate, naphthalene, or phenanthrene in a bioreactor treating contaminated soil

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Direct link between toluene degradation in contaminated-site microcosms and a Polaromonas strain

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Differential expression of two catechol 1,2-dioxygenases in Burkholderia sp. strain TH2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Biphenyl-metabolizing bacteria in the rhizosphere of horseradish and bulk soil contaminated by polychlorinated biphenyls as revealed by stable isotope probing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Isolation and characterization of Alicycliphilus denitrificans strain BC, which grows on benzene with chlorate as the electron acceptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Novel aerobic benzene degrading microorganisms identified in three soils by stable isotope probing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Cloning, expression, and regulation of the Pseudomonas cepacia protocatechuate 3,4-dioxygenase genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

Phenylalanine induces Burkholderia cenocepacia phenylacetic acid catabolism through degradation to phenylacetyl-CoA in synthetic cystic fibrosis sputum medium

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2011.02613.X

10.1111/J.1462-2920.2011.02613.X

21 January 2018

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DOI

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30 July 2017

1 reference