Conditional inactivation of Upstream Binding Factor reveals its epigenetic functions and the existence of a somatic nucleolar precursor body (Q34041740)

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English	Conditional inactivation of Upstream Binding Factor reveals its epigenetic functions and the existence of a somatic nucleolar precursor body	scientific article

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scholarly article

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Europe PubMed Central

30 July 2017

Conditional inactivation of Upstream Binding Factor reveals its epigenetic functions and the existence of a somatic nucleolar precursor body (English)

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Europe PubMed Central

30 July 2017

Nourdine Hamdane

1

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3 June 2020

Frédéric Lessard

6

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3 June 2020

8

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3 June 2020

author name string

Victor Y Stefanovsky

2

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3 June 2020

Michel G Tremblay

3

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3 June 2020

Attila Németh

4

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3 June 2020

Eric Paquet

5

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3 June 2020

Tom Moss

9

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3 June 2020

Elaine Sanij

7

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3 June 2020

publication date

14 August 2014

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30 July 2017

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3 June 2020

10

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3 June 2020

8

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3 June 2020

e1004505

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3 June 2020

copyright license

Creative Commons Attribution 4.0 International

14 August 2014

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April 2022 Public Data File from Crossref

copyright status

0 references

Precise deposition of histone H2A.Z in chromatin for genome expression and maintenance.

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Genomic characterization of the mouse ribosomal DNA locus

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Ribosome biogenesis in the yeast Saccharomyces cerevisiae

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Structure-function analysis of Hmo1 unveils an ancestral organization of HMG-Box factors involved in ribosomal DNA transcription from yeast to human.

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Dysregulation of the basal RNA polymerase transcription apparatus in cancer

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Regulation of pol III transcription by nutrient and stress signaling pathways

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The nucleolus under stress

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DNA methyltransferase inhibition may limit cancer cell growth by disrupting ribosome biogenesis

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Histone H1 phosphorylation is associated with transcription by RNA polymerases I and II

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5 July 2018

Initial genomics of the human nucleolus

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5 July 2018

Alternative chromatin structures of the 35S rRNA genes in Saccharomyces cerevisiae provide a molecular basis for the selective recruitment of RNA polymerases I and II.

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5 July 2018

H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

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5 July 2018

UBF levels determine the number of active ribosomal RNA genes in mammals

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5 July 2018

Pseudo-NORs: a novel model for studying nucleoli

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5 July 2018

The splice variants of UBF differentially regulate RNA polymerase I transcription elongation in response to ERK phosphorylation

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5 July 2018

Actively transcribed rRNA genes in S. cerevisiae are organized in a specialized chromatin associated with the high-mobility group protein Hmo1 and are largely devoid of histone molecules.

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5 July 2018

Epigenetic regulation of TTF-I-mediated promoter-terminator interactions of rRNA genes

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5 July 2018

Early pre-implantation lethality in mice carrying truncated mutation in the RNA polymerase 1-2 gene

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5 July 2018

Recruitment of factors linking transcription and processing of pre-rRNA to NOR chromatin is UBF-dependent and occurs independent of transcription in human cells

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5 July 2018

Protocol for the fast chromatin immunoprecipitation (ChIP) method

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5 July 2018

A novel TBP-associated factor of SL1 functions in RNA polymerase I transcription

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A housekeeper with power of attorney: the rRNA genes in ribosome biogenesis

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5 July 2018

Pol I transcription and pre-rRNA processing are coordinated in a transcription-dependent manner in mammalian cells

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5 July 2018

NORs and their transcription competence during the cell cycle

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5 July 2018

Regulation of rRNA synthesis in human and mouse cells is not determined by changes in active gene count

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4133168

5 July 2018

Growth factor signaling regulates elongation of RNA polymerase I transcription in mammals via UBF phosphorylation and r-chromatin remodeling

1 reference

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5 July 2018

Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin

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Genetic inactivation of the transcription factor TIF-IA leads to nucleolar disruption, cell cycle arrest, and p53-mediated apoptosis

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TBP-TAF complex SL1 directs RNA polymerase I pre-initiation complex formation and stabilizes upstream binding factor at the rDNA promoter.

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Nuclear bodies and compartments: functional roles and cellular signalling in health and disease

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5 July 2018

Fibrillarin is essential for early development and required for accumulation of an intron-encoded small nucleolar RNA in the mouse

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Tor Pathway Regulates Rrn3p-dependent Recruitment of Yeast RNA Polymerase I to the Promoter but Does Not Participate in Alteration of the Number of Active Genes

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5 July 2018

Hmo1, an HMG-box protein, belongs to the yeast ribosomal DNA transcription system

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5 July 2018

At the center of eukaryotic life

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5 July 2018

UBF binding in vivo is not restricted to regulatory sequences within the vertebrate ribosomal DNA repeat

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5 July 2018

An immediate response of ribosomal transcription to growth factor stimulation in mammals is mediated by ERK phosphorylation of UBF

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5 July 2018

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Regulation of ribosome biosynthesis in Escherichia coli and Saccharomyces cerevisiae: diversity and common principles

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The nature of the 'nucleolus precursor body' in early preimplantation embryos: a review of fine-structure cytochemical, immunocytochemical and autoradiographic data related to nucleolar function.

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Nucleolar function and size in cancer cells

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When rDNA transcription is arrested during mitosis, UBF is still associated with non-condensed rDNA.

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Nucleosome binding by the polymerase I transactivator upstream binding factor displaces linker histone H1.

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Ligand-activated site-specific recombination in mice

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The DNA supercoiling architecture induced by the transcription factor xUBF requires three of its five HMG-boxes

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5 July 2018

The rDNA transcription machinery is assembled during mitosis in active NORs and absent in inactive NORs

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5 July 2018

In vivo evidence that TATA-binding protein/SL1 colocalizes with UBF and RNA polymerase I when rRNA synthesis is either active or inactive

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Architectural transcription factors

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The RNA polymerase I transcription factor UBF is a sequence-tolerant HMG-box protein that can recognize structured nucleic acids

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5 July 2018

The RNA polymerase I transactivator upstream binding factor requires its dimerization domain and high-mobility-group (HMG) box 1 to bend, wrap, and positively supercoil enhancer DNA.

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Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4

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5 July 2018

Spacer promoters are essential for efficient enhancement of X. laevis ribosomal transcription.

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5 July 2018

The promotion of ribosomal transcription in eukaryotes

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5 July 2018

Two different chromatin structures coexist in ribosomal RNA genes throughout the cell cycle

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5 July 2018

Enhancers for RNA polymerase I in mouse ribosomal DNA

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Promoter interactions in retrovirus vectors introduced into fibroblasts and embryonic stem cells

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Loss of human ribosomal gene CpG methylation enhances cryptic RNA polymerase II transcription and disrupts ribosomal RNA processing

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21 January 2018

Growth-rate-dependent regulation of ribosome synthesis in E. coli: expression of the lacZ and galK genes fused to ribosomal promoters.

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21 January 2018

Upstream binding factor-dependent and pre-rRNA transcription-independent association of pre-rRNA processing factors with rRNA gene.

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21 January 2018

X-chromosome-encoded microRNA-19 and -18 are possible modulators of female immunity.

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21 January 2018

Control of rRNA expression by small molecules is dynamic and nonredundant

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21 January 2018

Colocalization analysis in fluorescence micrographs: verification of a more accurate calculation of pearson's correlation coefficient.

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21 January 2018

Transcription from the rat 45S ribosomal DNA promoter does not require the factor UBF.

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28 October 2018

A transcriptional function for the repetitive ribosomal spacer in Xenopus laevis

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21 January 2018

Maturation of the mouse oocyte in vitro. I. Sequence and timing of nuclear progression

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Amino acid starvation affects the initiation frequency of nucleolar RNA polymerase

1 reference

https://pubmed.ncbi.nlm.nih.gov/25121932

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ERK modulates DNA bending and enhancesome structure by phosphorylating HMG1-boxes 1 and 2 of the RNA polymerase I transcription factor UBF

1 reference

https://pubmed.ncbi.nlm.nih.gov/25121932

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Short-range DNA looping by the Xenopus HMG-box transcription factor, xUBF

1 reference

https://pubmed.ncbi.nlm.nih.gov/25121932

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PGEN.1004505

1 reference

Europe PubMed Central

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3 June 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25121932%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

1 reference

Europe PubMed Central

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3 June 2020

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