Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis (Q34039066)

30 July 2017

Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis (English)

1 reference

30 July 2017

3

1 reference

30 July 2017

Sayoni Das

6

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Natalie L Dawson

object named as

Natalie L Dawson

series ordinal

4

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Robert Rentzsch

object named as

Robert Rentzsch

series ordinal

9

0 references

Ian Sillitoe

series ordinal

5

object named as

Ian Sillitoe

1 reference

30 July 2017

10

Christine A Orengo

1 reference

30 July 2017

1

Jonathan G Lees

1 reference

30 July 2017

7

Corin Yeats

1 reference

30 July 2017

8

Benoit H Dessailly

1 reference

30 July 2017

David Lee

2

1 reference

PubMed ID

24270792

30 July 2017

language of work or name

English

0 references

publication date

21 November 2013

1 reference

30 July 2017

Nucleic Acids Research

1 reference

30 July 2017

42

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30 July 2017

D240-5

1 reference

30 July 2017

Database issue

1 reference

Creative Commons Attribution 3.0 Unported

30 July 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Protein function prediction using domain families

1 reference

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BioJS: an open source JavaScript framework for biological data visualization

5 July 2018

1 reference

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A large-scale evaluation of computational protein function prediction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

DbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

Update on activities at the Universal Protein Resource (UniProt) in 2013

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

Database resources of the National Center for Biotechnology Information

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

The Pfam protein families database

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

The UniProt-GO Annotation database in 2011.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

The IntAct molecular interaction database in 2012

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

ELM--the database of eukaryotic linear motifs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

REVIGO summarizes and visualizes long lists of gene ontology terms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

Extending CATH: increasing coverage of the protein structure universe and linking structure with function

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

DrugBank 3.0: a comprehensive resource for 'omics' research on drugs

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

A fast and automated solution for accurately resolving protein domain architectures.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

BLAST+: architecture and applications

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

GeMMA: functional subfamily classification within superfamilies of predicted protein structural domains

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

Recent developments in the MAFFT multiple sequence alignment program

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

Leveraging enzyme structure-function relationships for functional inference and experimental design: the structure-function linkage database

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

Domain rearrangements in protein evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

Structure validation by Calpha geometry: phi,psi and Cbeta deviation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

Scoring residue conservation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

Comparative protein modelling by satisfaction of spatial restraints

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3965083

5 July 2018

Identifiers

DOI

10.1093/NAR/GKT1205

1 reference

journals/nar/LeesLSDSDYDRO14

30 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

30 July 2017

1 reference

PubMed ID

24270792