Datgan, a reusable software system for facile interrogation and visualization of complex transcription profiling data (Q34001885)

30 July 2017

title

Datgan, a reusable software system for facile interrogation and visualization of complex transcription profiling data (English)

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30 July 2017

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3

Benjamin L King

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30 July 2017

Richard T Libby

4

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author name string

Gareth R Howell

series ordinal

1

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30 July 2017

David O Walton

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2

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30 July 2017

Simon W M John

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5

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30 July 2017

language of work or name

English

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publication date

24 August 2011

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30 July 2017

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30 July 2017

volume

12

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30 July 2017

page(s)

429

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Molecular clustering identifies complement and endothelin induction as early events in a mouse model of glaucoma

30 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

Early microglia activation in a mouse model of chronic glaucoma

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

Searching the Mouse Genome Informatics (MGI) resources for information on mouse biology from genotype to phenotype.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

Database resources of the National Center for Biotechnology Information

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

Axons of retinal ganglion cells are insulted in the optic nerve early in DBA/2J glaucoma

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

The Mouse Genome Database (MGD): mouse biology and model systems

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

The classical complement cascade mediates CNS synapse elimination

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

Changes in gene expression in experimental glaucoma and optic nerve transection: the equilibrium between protective and detrimental mechanisms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

Absence of glaucoma in DBA/2J mice homozygous for wild-type versions of Gpnmb and Tyrp1

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

Global changes in optic nerve head gene expression after exposure to elevated intraocular pressure in a rat glaucoma model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

Tumor necrosis factor-alpha mediates oligodendrocyte death and delayed retinal ganglion cell loss in a mouse model of glaucoma.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

ArrayExpress--a public database of microarray experiments and gene expression profiles

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

NCBI GEO: mining tens of millions of expression profiles--database and tools update

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

Progressive ganglion cell loss and optic nerve degeneration in DBA/2J mice is variable and asymmetric

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

The number of people with glaucoma worldwide in 2010 and 2020

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

Inherited glaucoma in DBA/2J mice: pertinent disease features for studying the neurodegeneration

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

Susceptibility to neurodegeneration in a glaucoma is modified by Bax gene dosage

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

High-dose radiation with bone marrow transfer prevents neurodegeneration in an inherited glaucoma

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

Using ANOVA to analyze microarray data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

Statistical tests for differential expression in cDNA microarray experiments

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

Summaries of Affymetrix GeneChip probe level data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

Mutations in genes encoding melanosomal proteins cause pigmentary glaucoma in DBA/2J mice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

CD137 induces proliferation and endomitosis in monocytes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

Interacting loci cause severe iris atrophy and glaucoma in DBA/2J mice.

5 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-429

Retinal ganglion cell degeneration is topological but not cell type specific in DBA/2J mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-429

Retinal ganglion cells downregulate gene expression and lose their axons within the optic nerve head in a mouse glaucoma model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-429

The Mouse Genome Database genotypes::phenotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-429

CD137 induces proliferation of murine hematopoietic progenitor cells and differentiation to macrophages

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-429

Microarray analysis of retinal gene expression in the DBA/2J model of glaucoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-429

TNF-alpha and TNF-alpha receptor-1 in the retina of normal and glaucomatous eyes

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3171729

CD137 (ILA/4-1BB), a member of the TNF receptor family, induces monocyte activation via bidirectional signaling

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21864367

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Using the KEGG database resource

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21864367

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-12-429

1 reference

Dimensions Publication ID

30 July 2017

0 references

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30 July 2017

1 reference