Nucleotide bias observed with a short SELEX RNA aptamer library (Q33972934)

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8 February 2020

title

Nucleotide bias observed with a short SELEX RNA aptamer library (English)

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8 February 2020

1 reference

1

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8 February 2020

William Rockey

5

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8 February 2020

Adam J. Dupuy

8

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8 February 2020

Mark A. Behlke

11

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8 February 2020

James O McNamara

12

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8 February 2020

author name string

Thomas Bair

2

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8 February 2020

Kristina Wyatt Thiel

3

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8 February 2020

Justin P Dassie

4

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8 February 2020

Craig A Howell

6

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8 February 2020

Xiuying Y Liu

7

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8 February 2020

Lingyan Huang

9

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8 February 2020

Richard Owczarzy

10

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8 February 2020

Paloma H Giangrande

13

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8 February 2020

publication date

28 June 2011

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Nucleic Acid Therapeutics

8 February 2020

published in

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8 February 2020

volume

21

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8 February 2020

issue

4

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8 February 2020

page(s)

253-263

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Monitoring genomic sequences during SELEX using high-throughput sequencing: neutral SELEX.

8 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198618

Systemic administration of optimized aptamer-siRNA chimeras promotes regression of PSMA-expressing tumors.

5 July 2018

1 reference

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Therapeutic applications of DNA and RNA aptamers.

5 July 2018

1 reference

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Selection, characterization and application of new RNA HIV gp 120 aptamers for facile delivery of Dicer substrate siRNAs into HIV infected cells

5 July 2018

1 reference

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RNA aptamer blockade of osteopontin inhibits growth and metastasis of MDA-MB231 breast cancer cells

5 July 2018

1 reference

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Assembling OX40 aptamers on a molecular scaffold to create a receptor-activating aptamer

5 July 2018

1 reference

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Multivalent 4-1BB binding aptamers costimulate CD8+ T cells and inhibit tumor growth in mice.

5 July 2018

1 reference

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Distinct roles of E2F proteins in vascular smooth muscle cell proliferation and intimal hyperplasia.

5 July 2018

1 reference

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Oligo- and poly-nucleotides: 50 years of chemical synthesis

5 July 2018

1 reference

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Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198618

Aptamers: an emerging class of therapeutics

5 July 2018

1 reference

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Ultraconserved Elements in the Human Genome

5 July 2018

1 reference

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RNA aptamers as reversible antagonists of coagulation factor IXa.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198618

Identification and characterization of nuclease-stabilized RNA molecules that bind human prostate cancer cells via the prostate-specific membrane antigen

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198618

Adaptive recognition by nucleic acid aptamers

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198618

Derivation of RNA aptamer inhibitors of human complement C5.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198618

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198618

Efficient synthesis of nucleic acids heavily modified with non-canonical ribose 2'-groups using a mutantT7 RNA polymerase (RNAP).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198618

2'-Fluoropyrimidine RNA-based aptamers to the 165-amino acid form of vascular endothelial growth factor (VEGF165). Inhibition of receptor binding and VEGF-induced vascular permeability through interactions requiring the exon 7-encoded domain

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198618

Mechanism of ribose 2'-group discrimination by an RNA polymerase

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198618

An RNA motif that binds ATP.

5 July 2018

1 reference

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A mutant T7 RNA polymerase as a DNA polymerase.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198618

Stability of ribonucleic acid double-stranded helices

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3198618

Thermodynamic stability and statistical significance of potential stem-loop structures situated at the frameshift sites of retroviruses

5 July 2018

1 reference

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The accuracy of reverse transcriptase from HIV-1.

5 July 2018

1 reference

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Improved free-energy parameters for predictions of RNA duplex stability

5 July 2018

1 reference

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Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

5 July 2018

1 reference

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In vitro selection of RNA molecules that bind specific ligands

5 July 2018

1 reference

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Comparison of HIV-1 and avian myeloblastosis virus reverse transcriptase fidelity on RNA and DNA templates

5 July 2018

1 reference

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Mapping of conserved RNA secondary structures predicts thousands of functional noncoding RNAs in the human genome

5 July 2018

1 reference

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Pegaptanib for neovascular age-related macular degeneration

29 October 2018

1 reference

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The robustness of naturally and artificially selected nucleic acid secondary structures.

29 October 2018

1 reference

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Into the heart of darkness: large-scale clustering of human non-coding DNA.

29 October 2018

1 reference

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Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences.

29 October 2018

1 reference

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A computational procedure for assessing the significance of RNA secondary structure

29 October 2018

1 reference

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Antidote-controlled platelet inhibition targeting von Willebrand factor with aptamers

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21793789

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1089/NAT.2011.0288

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21793789%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21793789%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

PubMed publication ID

21793789

1 reference