FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking (Q33957727)

30 July 2017

FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking (English)

1 reference

30 July 2017

1 reference

2

Ruth Nussinov

1 reference

30 July 2017

3

Haim J Wolfson

1 reference

30 July 2017

1

Efrat Mashiach

1 reference

PubMed ID

20460459

30 July 2017

language of work or name

English

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publication date

11 May 2010

1 reference

30 July 2017

Nucleic Acids Research

1 reference

30 July 2017

38

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30 July 2017

Web Server issue

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30 July 2017

W457-61

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Creative Commons Attribution-NonCommercial 2.5 Generic

30 July 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Biomolecules in the computer: Jmol to the rescue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896170

FiberDock: Flexible induced-fit backbone refinement in molecular docking

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896170

Principles of flexible protein-protein docking

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896170

The RosettaDock server for local protein-protein docking

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896170

FireDock: a web server for fast interaction refinement in molecular docking

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896170

Protein-protein docking in CAPRI using ATTRACT to account for global and local flexibility.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896170

NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896170

GRAMM-X public web server for protein-protein docking

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896170

Can conformational change be described by only a few normal modes?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896170

Refinement of docked protein-ligand and protein-DNA structures using low frequency normal mode amplitude optimization

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896170

PatchDock and SymmDock: servers for rigid and symmetric docking

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896170

Anchor residues in protein-protein interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896170

UCSF Chimera--a visualization system for exploratory research and analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896170

ClusPro: a fully automated algorithm for protein-protein docking

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896170

HADDOCK: a protein-protein docking approach based on biochemical or biophysical information

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896170

5 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896170

Energy minimization in low-frequency normal modes to efficiently allow for global flexibility during systematic protein-protein docking.

5 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ373

Incorporating biochemical information and backbone flexibility in RosettaDock for CAPRI rounds 6-12.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ373

Guided docking: first step to locate potential binding sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ373

Implicit flexibility in protein docking: cross-docking and local refinement.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ373

ZDOCK: an initial-stage protein-docking algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ373

Increasing the efficiency of SAGE adaptor ligation by directed ligation chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ373

Analysis of domain motions by approximate normal mode calculations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ373

Representing receptor flexibility in ligand docking through relevant normal modes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ373

FireDock: fast interaction refinement in molecular docking.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ373

A new approach to variable metric algorithms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ373

Docking unbound proteins using shape complementarity, desolvation, and electrostatics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ373

Protein-protein interactions: hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: implications for docking.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ373

Protein-protein docking with backbone flexibility.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896170

Protein docking using spherical polar Fourier correlations.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2896170

The relationship between the flexibility of proteins and their conformational states on forming protein-protein complexes with an application to protein-protein docking

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20460459

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ373

1 reference

journals/nar/MashiachNW10

30 July 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

30 July 2017

1 reference

PubMed ID

20460459