Stepwise threshold clustering: a new method for genotyping MHC loci using next-generation sequencing technology (Q33921165)

30 July 2017

title

Stepwise threshold clustering: a new method for genotyping MHC loci using next-generation sequencing technology (English)

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30 July 2017

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Daniel I Bolnick

2

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William E Stutz

series ordinal

1

object named as

William E Stutz

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30 July 2017

language of work or name

English

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publication date

18 July 2014

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30 July 2017

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30 July 2017

volume

9

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30 July 2017

issue

7

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30 July 2017

page(s)

e100587

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Creative Commons Attribution 4.0 International

30 July 2017

copyright license

start time

18 July 2014

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

massive parallel sequencing

1 reference

Comprehensive analysis of MHC class II genes in teleost fish genomes reveals dispensability of the peptide-loading DM system in a large part of vertebrates

inferred from title

cites work

1 reference

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5 July 2018

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Transmission of a fatal clonal tumor by biting occurs due to depleted MHC diversity in a threatened carnivorous marsupial

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Gene map of the extended human MHC.

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Recent duplication and inter-locus gene conversion in major histocompatibility class II genes in a teleost, the three-spined stickleback.

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Population biology of antigen presentation by MHC class I molecules

5 July 2018

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Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA

5 July 2018

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5 July 2018

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Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection

5 July 2018

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Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms

5 July 2018

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Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection

5 July 2018

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Allelic genealogy under overdominant and frequency-dependent selection and polymorphism of major histocompatibility complex loci

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103772

Overdominant vs. frequency-dependent selection at MHC loci

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103772

How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings.

5 July 2018

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The Evolution of Mating Preferences and Major Histocompatibility Complex Genes.

21 January 2018

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Evaluating patterns of convergent evolution and trans-species polymorphism at MHC immunogenes in two sympatric stickleback species

21 January 2018

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New generation sequencers as a tool for genotyping of highly polymorphic multilocus MHC system

21 January 2018

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Evaluation of two approaches to genotyping major histocompatibility complex class I in a passerine-CE-SSCP and 454 pyrosequencing.

21 January 2018

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MHC diversity, malaria and lifetime reproductive success in collared flycatchers.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0100587

Major histocompatibility complex class II compatibility, but not class I, predicts mate choice in a bird with highly developed olfaction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0100587

MHC variation is related to a sexually selected ornament, survival, and parasite resistance in common yellowthroats

21 January 2018

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Simple approach to reduce PCR artefact formation leads to reliable genotyping of MHC and other highly polymorphic loci--implications for evolutionary analysis

21 January 2018

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Distance-based multivariate analyses confound location and dispersion effects

21 January 2018

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mvabund- anRpackage for model-based analysis of multivariate abundance data

21 January 2018

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Female sticklebacks count alleles in a strategy of sexual selection explaining MHC polymorphism

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0100587

Multiple parasites are driving major histocompatibility complex polymorphism in the wild.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0100587

Charactreization of polymorphism within the H-2M MHC class II loci

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0100587

Gene conversion rapidly generates major histocompatibility complex diversity in recently founded bird populations

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0100587

Nonparallelism in MHCIIβ diversity accompanies nonparallelism in pathogen infection of lake whitefish (Coregonus clupeaformis) species pairs as revealed by next-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0100587

Cloning of major histocompatibility complex (Mhc) genes from threespine stickleback, Gasterosteus aculeatus.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4103772

Analysis of major histocompatibility complex class II gene in water voles using capillary electrophoresis-single stranded conformation polymorphism

29 October 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0100587

Recombinant DRB sequences produced by mismatch repair of heteroduplexes during cloning in Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0100587

Relative roles of mutation and recombination in generating allelic polymorphism at an MHC class II locus in Peromyscus maniculatus

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0100587

Maintenance of Histocompatibility Polymorphisms

21 January 2018

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High resolution HLA class I typing by reference strand mediated conformation analysis (RSCA)

21 January 2018

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12 December 2020

Deep sequencing of a genetically heterogeneous sample: local haplotype reconstruction and read error correction

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12 December 2020

High-resolution typing for chicken BF2 (MHC class I) alleles by automated sequencing

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12 December 2020

Recombinant DNA sequences generated by PCR amplification

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12 December 2020

Major histocompatibility complex variation in the Arabian oryx

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12 December 2020

Inter- and intralocus recombination drive MHC class IIB gene diversification in a teleost, the three-spined stickleback Gasterosteus aculeatus

1 reference

12 December 2020

Automated, solid-phase sequencing of DRB region genes using T7 sequencing chemistry and dye-labeled primers

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12 December 2020

Evolution of diversity at the major histocompatibility complex

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12 December 2020

Pathogen resistance and genetic variation at MHC loci

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12 December 2020

10.1371/JOURNAL.PONE.0100587

Identifiers

DOI

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30 July 2017

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30 July 2017

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