Chemical cross-linking/mass spectrometry targeting acidic residues in proteins and protein complexes (Q33854206)

29 July 2017

Chemical cross-linking/mass spectrometry targeting acidic residues in proteins and protein complexes (English)

1 reference

29 July 2017

5

Judith Frydman

1 reference

29 July 2017

Alexander Leitner

1

0 references

Ruedi Aebersold

7

object named as

Ruedi Aebersold

1 reference

29 July 2017

Lukasz A Joachimiak

2

1 reference

29 July 2017

Pia Unverdorben

3

1 reference

29 July 2017

Thomas Walzthoeni

4

1 reference

29 July 2017

Friedrich Förster

6

1 reference

29 July 2017

language of work or name

English

0 references

publication date

17 June 2014

1 reference

Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

1 reference

29 July 2017

111

1 reference

29 July 2017

26

1 reference

29 July 2017

9455-9460

1 reference

Deep classification of a large cryo-EM dataset defines the conformational landscape of the 26S proteasome

29 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Distance restraints from crosslinking mass spectrometry: mining a molecular dynamics simulation database to evaluate lysine-lysine distances

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Enhanced identification of zero-length chemical cross-links using label-free quantitation and high-resolution fragment ion spectra

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Cross-link guided molecular modeling with ROSETTA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Structure of the 26S proteasome with ATP-γS bound provides insights into the mechanism of nucleotide-dependent substrate translocation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Conjugation of polysaccharide 6B from Streptococcus pneumoniae with pneumococcal surface protein A: PspA conformation and its effect on the immune response

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Mass spectrometry supported determination of protein complex structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

The Crystal Structures of the Eukaryotic Chaperonin CCT Reveal Its Functional Partitioning

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

In vivo protein interaction network identified with a novel real-time cross-linked peptide identification strategy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Protein interactions, post-translational modifications and topologies in human cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Update on activities at the Universal Protein Resource (UniProt) in 2013

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Cross-linking mass spectrometry and mutagenesis confirm the functional importance of surface interactions between CYP3A4 and holo/apo cytochrome b(5).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Photocrosslinking approaches to interactome mapping

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Molecular architecture of human polycomb repressive complex 2

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

A method for integrative structure determination of protein-protein complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Dynamics of ribosomal protein S1 on a bacterial ribosome with cross-linking and mass spectrometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Near-atomic resolution structural model of the yeast 26S proteasome.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Mass spectrometry-based structural proteomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Chemical cross-linking, mass spectrometry, and in silico modeling of proteasomal 20S core particles of the haloarchaeon Haloferax volcanii

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

In vivo protein complex topologies: sights through a cross-linking lens

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Mapping the structural topology of the yeast 19S proteasomal regulatory particle using chemical cross-linking and probabilistic modeling

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

The molecular architecture of the eukaryotic chaperonin TRiC/CCT

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Crosslinking-MS analysis reveals RNA polymerase I domain architecture and basis of rRNA cleavage

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Modification site localization scoring: strategies and performance

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Subunit order of eukaryotic TRiC/CCT chaperonin by cross-linking, mass spectrometry, and combinatorial homology modeling

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Expanding the chemical cross-linking toolbox by the use of multiple proteases and enrichment by size exclusion chromatography

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Complete subunit architecture of the proteasome regulatory particle

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Fast multi-blind modification search through tandem mass spectrometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Joining forces: integrating proteomics and cross-linking with the mass spectrometry of intact complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Structure of the 26S proteasome from Schizosaccharomyces pombe at subnanometer resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

The beginning of a beautiful friendship: cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Novel amidinating cross-linker for facilitating analyses of protein structures and interactions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Development of a novel cross-linking strategy for fast and accurate identification of cross-linked peptides of protein complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Intra-molecular cross-linking of acidic residues for protein structure studies.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Identification of cross-linked peptides from large sequence databases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Structural organization of the 19S proteasome lid: insights from MS of intact complexes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Comparative cross-linking and mass spectrometry of an intact F-type ATPase suggest a role for phosphorylation.

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1320298111

The combination of hydrogen/deuterium exchange or chemical cross-linking techniques with mass spectrometry: mapping of human 14-3-3ζ homodimer interface

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1320298111

Development of an indole-based chemically cleavable linker concept for immobilizing bait compounds for protein pull-down experiments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1320298111

False discovery rate estimation for cross-linked peptides identified by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1320298111

Closing the folding chamber of the eukaryotic chaperonin requires the transition state of ATP hydrolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1320298111

Chemical Cross-linking and Mass Spectrometry for the Structural Analysis of Protein Assemblies

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1320298111

Structural model of lymphocyte receptor NKR-P1C revealed by mass spectrometry and molecular modeling

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4084482

Structural Probing of a Protein Phosphatase 2A Network by Chemical Cross-Linking and Mass Spectrometry

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24938783

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Liquid chromatographic determination of microcystins in water samples following pre-column excimer fluorescence derivatization with 4-(1-pyrene)butanoic acid hydrazide

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24938783

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structural analysis of a prokaryotic ribosome using a novel amidinating cross-linker and mass spectrometry

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24938783

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1320298111

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference