Knowledge management for systems biology a general and visually driven framework applied to translational medicine (Q33837463)

29 July 2017

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title

Knowledge management for systems biology a general and visually driven framework applied to translational medicine (English)

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29 July 2017

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Susana G Kalko

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Josep Roca

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Josep Roca

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Marta Cascante Serratosa

8

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Marta Cascante

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29 July 2017

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Francesco Falciani

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29 July 2017

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Nil Turan

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29 July 2017

Dieter Maier

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29 July 2017

Wenzel Kalus

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29 July 2017

Martin Wolff

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29 July 2017

Igor Marin de Mas

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29 July 2017

Miguel Hernandez

10

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29 July 2017

Jordi Villà-Freixa

11

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29 July 2017

Jordi Villà-Freixa

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29 July 2017

Sascha Losko

13

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29 July 2017

5 March 2011

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29 July 2017

38

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describes a project that uses

29 July 2017

Cytoscape

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Cytoscape

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1752-0509-5-38

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cites work

The BioPAX community standard for pathway data sharing

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The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources

4 July 2018

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BioGateway: a semantic systems biology tool for the life sciences

4 July 2018

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Semantic data integration and knowledge management to represent biological network associations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

The phenotype and genotype experiment object model (PaGE-OM): a robust data structure for information related to DNA variation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

Genotype-phenotype databases: challenges and solutions for the post-genomic era.

4 July 2018

1 reference

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Bio2RDF: Towards a mashup to build bioinformatics knowledge systems

4 July 2018

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Data capture in bioinformatics: requirements and experiences with Pedro

4 July 2018

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State of the nation in data integration for bioinformatics

4 July 2018

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4 July 2018

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A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

The minimum information required for reporting a molecular interaction experiment (MIMIx).

4 July 2018

1 reference

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NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

4 July 2018

1 reference

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The Life Sciences Semantic Web is full of creeps!

4 July 2018

1 reference

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Taverna: a tool for building and running workflows of services

4 July 2018

1 reference

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Graph-based analysis and visualization of experimental results with ONDEX

4 July 2018

1 reference

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BIOZON: a system for unification, management and analysis of heterogeneous biological data

4 July 2018

1 reference

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Atlas - a data warehouse for integrative bioinformatics

4 July 2018

1 reference

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Entrez Gene: gene-centered information at NCBI

4 July 2018

1 reference

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CellML: its future, present and past

4 July 2018

1 reference

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Protégé-2000: an open-source ontology-development and knowledge-acquisition environment.

4 July 2018

1 reference

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UniProt: the Universal Protein knowledgebase

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

caCORE: a common infrastructure for cancer informatics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

Cytoscape: a software environment for integrated models of biomolecular interaction networks

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

Integrating biological databases

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

Osprey: a network visualization system

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

The generic genome browser: a building block for a model organism system database

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

A model for data integration systems of biomedical data applied to online genetic databases

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

Genew: the human gene nomenclature database

4 July 2018

1 reference

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The Ensembl genome database project

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

TAMBIS: transparent access to multiple bioinformatics information sources

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

KEGG: kyoto encyclopedia of genes and genomes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

Entrez: molecular biology database and retrieval system

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

SRS: information retrieval system for molecular biology data banks

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

The EMBL nucleotide sequence data library

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

Functional modules integrating essential cellular functions are predictive of the response of leukaemia cells to DNA damage.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

The changes in the energy metabolism of human muscle induced by training.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3060864

29 October 2018

Identifiers

DOI

10.1186/1752-0509-5-38

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journals/bmcsb/MaierKWKRMTCFHVL11

29 July 2017

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DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

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29 July 2017

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