ChIPseqR: analysis of ChIP-seq experiments (Q33807777)

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21 January 2020

title

ChIPseqR: analysis of ChIP-seq experiments (English)

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21 January 2020

1

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21 January 2020

Chris A Helliwell

series ordinal

2

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21 January 2020

David Bulger

series ordinal

3

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21 January 2020

author name string

Glenn Stone

series ordinal

4

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21 January 2020

publication date

31 January 2011

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21 January 2020

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21 January 2020

volume

12

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21 January 2020

page(s)

39

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Creative Commons Attribution 2.0 Generic

21 January 2020

copyright license

start time

31 January 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-12-39

0 references

cites work

BayesPeak: Bayesian analysis of ChIP-seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

Comparative study on ChIP-seq data: normalization and binding pattern characterization

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

Nucleosome positioning and gene regulation: advances through genomics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

Design and analysis of ChIP-seq experiments for DNA-binding proteins

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

An integrated software system for analyzing ChIP-chip and ChIP-seq data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

F-Seq: a feature density estimator for high-throughput sequence tags

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

Nucleosome positioning in human HOX gene clusters

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

Nucleosome organization in the Drosophila genome.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

GeneTrack--a genomic data processing and visualization framework.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

Dynamic regulation of nucleosome positioning in the human genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

A high-resolution atlas of nucleosome occupancy in yeast

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

Nucleosome positioning signals in genomic DNA

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

Genome-wide mapping of in vivo protein-DNA interactions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

High-resolution profiling of histone methylations in the human genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

A genomic code for nucleosome positioning

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

Gene splice sites correlate with nucleosome positions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3045301

30 October 2018

Identifiers

DOI

10.1186/1471-2105-12-39

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21281468%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/HumburgHBS11

21 January 2020

DBLP publication ID

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DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1050932232

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Fatcat ID

release_so3q55jz3zhyvc77vk5uaki3jy

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Fatcat

https://api.fatcat.wiki/v0/release/so3q55jz3zhyvc77vk5uaki3jy

mapped directly with Wikidata item

24 November 2022

based on heuristic

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21 January 2020

PubMed publication ID

21281468

1 reference