The NPH-II helicase displays efficient DNA x RNA helicase activity and a pronounced purine sequence bias (Q33799858)

29 July 2017

The NPH-II helicase displays efficient DNA x RNA helicase activity and a pronounced purine sequence bias (English)

1 reference

29 July 2017

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Sean David Taylor

1

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29 July 2017

Amanda Solem

series ordinal

2

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29 July 2017

Jane Kawaoka

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3

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29 July 2017

Anna Marie Pyle

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4

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29 July 2017

language of work or name

English

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publication date

28 January 2010

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Journal of Biological Chemistry

29 July 2017

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29 July 2017

285

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29 July 2017

11692-11703

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29 July 2017

15

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describes a project that uses

29 July 2017

ImageQuant

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2857044/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Translocation and unwinding mechanisms of RNA and DNA helicases

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Determinants of vaccinia virus early gene transcription termination.

4 July 2018

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NS3 helicase actively separates RNA strands and senses sequence barriers ahead of the opening fork

4 July 2018

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Structural basis for DNA duplex separation by a superfamily-2 helicase

4 July 2018

1 reference

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UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke

4 July 2018

1 reference

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Choosing between DNA and RNA: the polymer specificity of RNA helicase NPH-II

4 July 2018

1 reference

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Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks

4 July 2018

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The thermodynamics of DNA structural motifs

4 July 2018

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Prokaryotic and eukaryotic DNA helicases. Essential molecular motor proteins for cellular machinery

4 July 2018

1 reference

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DEAD-box proteins: the driving forces behind RNA metabolism

4 July 2018

1 reference

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DExD/H-box proteins and their partners: helping RNA helicases unwind

4 July 2018

1 reference

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Structural analysis of DNA replication fork reversal by RecG

4 July 2018

1 reference

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DExD/H box RNA helicases: from generic motors to specific dissociation functions

4 July 2018

1 reference

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A tertiary interaction that links active-site domains to the 5' splice site of a group II intron

4 July 2018

1 reference

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DNA helicases: 'inching forward'.

4 July 2018

1 reference

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Nucleotide analog interference mapping

4 July 2018

1 reference

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Defining functional groups, core structural features and inter-domain tertiary contacts essential for group II intron self-splicing: a NAIM analysis

4 July 2018

1 reference

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The nucleoside triphosphatase and helicase activities of vaccinia virus NPH-II are essential for virus replication

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857044

Hepatitis C virus NS3 RNA helicase domain with a bound oligonucleotide: the crystal structure provides insights into the mode of unwinding

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857044

Vaccinia NPH-I, a DExH-box ATPase, is the energy coupling factor for mRNA transcription termination

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857044

Vaccinia virions lacking the RNA helicase nucleoside triphosphate phosphohydrolase II are defective in early transcription

4 July 2018

1 reference

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Vaccinia virus RNA helicase: nucleic acid specificity in duplex unwinding

4 July 2018

1 reference

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Vaccinia virion protein I8R has both DNA and RNA helicase activities: implications for vaccinia virus transcription

4 July 2018

1 reference

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Vaccinia virus RNA helicase. Directionality and substrate specificity.

4 July 2018

1 reference

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An expanding family of helicases within the 'DEAD/H' superfamily

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857044

Evidence from CD spectra that d(purine).r(pyrimidine) and r(purine).d(pyrimidine) hybrids are in different structural classes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857044

Complete nucleotide sequences of two adjacent early vaccinia virus genes located within the inverted terminal repetition.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857044

Transcription of vaccinia virus early genes by enzymes isolated from vaccinia virions terminates downstream of a regulatory sequence

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857044

Purification and characterization of a transcription termination factor from vaccinia virions.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857044

Oligonucleotide sequence signaling transcriptional termination of vaccinia virus early genes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857044

Factor-dependent transcription termination by vaccinia virus RNA polymerase. Evidence that the cis-acting termination signal is in nascent RNA.

4 July 2018

1 reference

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Bromouridine triphosphate inhibits transcription termination and mRNA release by vaccinia virions.

4 July 2018

1 reference

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Improved free-energy parameters for predictions of RNA duplex stability

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857044

Vaccinia virus encodes four putative DNA and/or RNA helicases distantly related to each other

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2857044

Backbone tracking by the SF2 helicase NPH-II.

4 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.088559

Active disruption of an RNA-protein interaction by a DExH/D RNA helicase

21 January 2018

1 reference

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Influences of ribonucleotide on a duplex conformation and its thermal stability: study with the chimeric RNA-DNA strands.

21 January 2018

1 reference

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A stepwise 2'-hydroxyl activation mechanism for the bacterial transcription termination factor Rho helicase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.088559

Nucleic acid unwinding by hepatitis C virus and bacteriophage t7 helicases is sensitive to base pair stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.088559

The serine protease domain of hepatitis C viral NS3 activates RNA helicase activity by promoting the binding of RNA substrate

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.088559

The DExH protein NPH-II is a processive and directional motor for unwinding RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M109.088559

Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20110368

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/JBC.M109.088559

1 reference

29 July 2017

1 reference

29 July 2017

1 reference