Vaccinia topoisomerase and Cre recombinase catalyze direct ligation of activated DNA substrates containing a 3'-para-nitrophenyl phosphate ester (Q33786691)

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English	Vaccinia topoisomerase and Cre recombinase catalyze direct ligation of activated DNA substrates containing a 3'-para-nitrophenyl phosphate ester	scientific article

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scholarly article

1 reference

Europe PubMed Central

29 July 2017

Vaccinia topoisomerase and Cre recombinase catalyze direct ligation of activated DNA substrates containing a 3'-para-nitrophenyl phosphate ester (English)

1 reference

Europe PubMed Central

29 July 2017

4

object named as

A B Burgin

1 reference

Europe PubMed Central

29 July 2017

author name string

G Woodfield

1

1 reference

Europe PubMed Central

29 July 2017

C Cheng

2

1 reference

Europe PubMed Central

29 July 2017

S Shuman

3

1 reference

Europe PubMed Central

29 July 2017

language of work or name

0 references

publication date

1 September 2000

1 reference

Europe PubMed Central

29 July 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

29 July 2017

28

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Europe PubMed Central

29 July 2017

3323-3331

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Europe PubMed Central

29 July 2017

17

1 reference

Europe PubMed Central

29 July 2017

Stereochemical outcome and kinetic effects of Rp- and Sp-phosphorothioate substitutions at the cleavage site of vaccinia type I DNA topoisomerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Coming or going it's another pretty picture for the lambda-Int family album

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

DNA contacts stimulate catalysis by a poxvirus topoisomerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Vaccinia virus DNA topoisomerase: a model eukaryotic type IB enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Camptothecins inhibit the utilization of hydrogen peroxide in the ligation step of topoisomerase I catalysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Polynucleotide ligase activity of eukaryotic topoisomerase I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Site-specific ribonuclease activity of eukaryotic DNA topoisomerase I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Conservation of structure and mechanism between eukaryotic topoisomerase I and site-specific recombinases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Replacement of the active site tyrosine of vaccinia DNA topoisomerase by glutamate, cysteine or histidine converts the enzyme into a site-specific endonuclease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Crystal structure of the site-specific recombinase, XerD.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Structure of Cre recombinase complexed with DNA in a site-specific recombination synapse

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Xer recombination in Escherichia coli. Site-specific DNA topoisomerase activity of the XerC and XerD recombinases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Mechanism of DNA transesterification by vaccinia topoisomerase: catalytic contributions of essential residues Arg-130, Gly-132, Tyr-136 and Lys-167.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Recent advances in the discovery and development of topoisomerase inhibitors as antitumor agents

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

DNA strand transfer reactions catalyzed by vaccinia topoisomerase: hydrolysis and glycerololysis of the covalent protein-DNA intermediate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Molecular organization in site-specific recombination: the catalytic domain of bacteriophage HP1 integrase at 2.7 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Flexibility in DNA recombination: structure of the lambda integrase catalytic core

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

A eukaryotic enzyme that can disjoin dead-end covalent complexes between DNA and type I topoisomerases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Resolution of Holliday junctions by eukaryotic DNA topoisomerase I

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Ligation of synthetic activated DNA substrates by site-specific recombinases and topoisomerase I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Vaccinia DNA topoisomerase I: single-turnover and steady-state kinetic analysis of the DNA strand cleavage and ligation reactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

A novel suicide substrate for DNA topoisomerases and site-specific recombinases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Bacteriophage P1 site-specific recombination. Purification and properties of the Cre recombinase protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Characterization of vaccinia virus DNA topoisomerase I expressed in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Isolation and characterization of intermediates in site-specific recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Chemical development in the design of oligonucleotide probes for binding to DNA and RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Two classes of DNA end-joining reactions catalyzed by vaccinia topoisomerase I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

Nicking-closing activity associated with bacteriophage lambda int gene product

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

28 July 2018

DNA strand transfer catalyzed by vaccinia topoisomerase: peroxidolysis and hydroxylaminolysis of the covalent protein-DNA intermediate.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

30 October 2018

Melanoplus sanguinipes entomopoxvirus DNA topoisomerase: site-specific DNA transesterification and effects of 5'-bridging phosphorothiolates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

30 October 2018

Suicide substrates reveal properties of the homology-dependent steps during integrative recombination of bacteriophage lambda.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

30 October 2018

Specific DNA cleavage and binding by vaccinia virus DNA topoisomerase I.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110714

30 October 2018

Linking-number changes in the DNA substrate during Cre-mediated loxP site-specific recombination

1 reference

https://pubmed.ncbi.nlm.nih.gov/10954601

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA strand transfer reactions catalyzed by vaccinia topoisomerase I

1 reference

https://pubmed.ncbi.nlm.nih.gov/10954601

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA cleavage in trans by the active site tyrosine during Flp recombination: Switching protein partners before exchanging strands

1 reference

https://pubmed.ncbi.nlm.nih.gov/10954601

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ligation activity of FLP recombinase. The strand ligation activity of a site-specific recombinase using an activated DNA substrate

1 reference

https://pubmed.ncbi.nlm.nih.gov/10954601

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mechanism of site-specific recombination. Logic of assembling recombinase catalytic site from fractional active sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/10954601

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The covalent eukaryotic topoisomerase I-DNA intermediate catalyzes pH-dependent hydrolysis and alcoholysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/10954601

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Vaccinia DNA topoisomerase I: kinetic evidence for general acid-base catalysis and a conformational step

1 reference

https://pubmed.ncbi.nlm.nih.gov/10954601

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutational Analysis of 39 Residues of Vaccinia DNA Topoisomerase Identifies Lys-220, Arg-223, and Asn-228 as Important for Covalent Catalysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/10954601

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Kinetic Analysis of DNA and RNA Strand Transfer Reactions Catalyzed by Vaccinia Topoisomerase

1 reference

https://pubmed.ncbi.nlm.nih.gov/10954601

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/28.17.3323

1 reference

Europe PubMed Central

29 July 2017

1 reference

Europe PubMed Central

29 July 2017

1 reference

Europe PubMed Central

29 July 2017

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