Structural basis of polyamine-DNA recognition: spermidine and spermine interactions with genomic B-DNAs of different GC content probed by Raman spectroscopy (Q33786651)

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English	Structural basis of polyamine-DNA recognition: spermidine and spermine interactions with genomic B-DNAs of different GC content probed by Raman spectroscopy	scientific article

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scholarly article

1 reference

Europe PubMed Central

29 July 2017

Structural basis of polyamine-DNA recognition: spermidine and spermine interactions with genomic B-DNAs of different GC content probed by Raman spectroscopy (English)

1 reference

Europe PubMed Central

29 July 2017

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Raman spectroscopy

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author name string

H Deng

1

1 reference

Europe PubMed Central

29 July 2017

V A Bloomfield

2

1 reference

Europe PubMed Central

29 July 2017

J M Benevides

3

1 reference

Europe PubMed Central

29 July 2017

G J Thomas

4

1 reference

Europe PubMed Central

29 July 2017

language of work or name

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publication date

1 September 2000

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Europe PubMed Central

29 July 2017

Nucleic Acids Research

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Europe PubMed Central

29 July 2017

28

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Europe PubMed Central

29 July 2017

17

1 reference

Europe PubMed Central

29 July 2017

3379-3385

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Europe PubMed Central

29 July 2017

describes a project that uses

Raman spectroscopy

1 reference

based on heuristic

inferred from title

Protein-directed DNA structure. I. Raman spectroscopy of a high-mobility-group box with application to human sex reversal

1 reference

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4 July 2018

Dependence of the Raman signature of genomic B-DNA on nucleotide base sequence

1 reference

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4 July 2018

Selectivity of polyamines on the stability of RNA-DNA hybrids containing phosphodiester and phosphorothioate oligodeoxyribonucleotides

1 reference

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4 July 2018

Ionic and structural specificity effects of natural and synthetic polyamines on the aggregation and resolubilization of single-, double-, and triple-stranded DNA.

1 reference

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4 July 2018

Conformation and interactions of the packaged double-stranded DNA genome of bacteriophage T7.

1 reference

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4 July 2018

DNA bending by small, mobile multivalent cations

1 reference

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4 July 2018

Ionic effects on the elasticity of single DNA molecules

1 reference

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4 July 2018

Nine polymorphic crystal structures of d(CCGGGCCCGG), d(CCGGGCCm5CGG), d(Cm5CGGGCCm5CGG) and d(CCGGGCC(Br)5CGG) in three different conformations: effects of spermine binding and methylation on the bending and condensation of A-DNA

1 reference

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4 July 2018

Stretching DNA with optical tweezers

1 reference

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4 July 2018

Crystal structures of A-DNA duplexes

1 reference

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4 July 2018

Temperature-dependent ultraviolet resonance Raman spectroscopy of the premelting state of dA.dT DNA.

1 reference

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4 July 2018

DNA melting investigated by differential scanning calorimetry and Raman spectroscopy

1 reference

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4 July 2018

Neomycin, spermine and hexaamminecobalt (III) share common structural motifs in converting B- to A-DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

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Raman spectroscopy of DNA-metal complexes. II. The thermal denaturation of DNA in the presence of Sr2+, Ba2+, Mg2+, Ca2+, Mn2+, Co2+, Ni2+, and Cd2+.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

Spermine binding to GC-rich DNA: experimental and theoretical studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

Raman spectroscopy of DNA-metal complexes. I. Interactions and conformational effects of the divalent cations: Mg, Ca, Sr, Ba, Mn, Co, Ni, Cu, Pd, and Cd

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

Rotational dynamics of hexaamminecobalt(III) bound to oligomeric DNA: correlation with cation-induced structural transitions

1 reference

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An altered specificity mutation in the lambda repressor induces global reorganization of the protein-DNA interface

1 reference

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4 July 2018

Polarized Raman spectra of oriented fibers of A DNA and B DNA: anisotropic and isotropic local Raman tensors of base and backbone vibrations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

The interaction of polyamines with DNA: a23Na NMR study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

Spermidine-condensed phi X174 DNA cleavage by micrococcal nuclease: torus cleavage model and evidence for unidirectional circumferential DNA wrapping

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

Binding of small cations to deoxyribonucleic acid. Nucleotide specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

Recent advances in the biochemistry of polyamines in eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

Molecular dynamics of spermine-DNA interactions: sequence specificity and DNA bending for a simple ligand

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

Base only binding of spermine in the deep groove of the A-DNA octamer d(GTGTACAC)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

The molecular structure of the left-handed Z-DNA double helix at 1.0-A atomic resolution. Geometry, conformation, and ionic interactions of d(CGCGCG)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

DNA recognition by the helix-turn-helix motif: investigation by laser Raman spectroscopy of the phage .lambda. repressor and its interaction with operator sites OL1 and OR3

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

Hexaamminecobalt(III) binding environments on double-helical DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

Secondary structure and interactions of the packaged dsDNA genome of bacteriophage P22 investigated by Raman difference spectroscopy

1 reference

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Compact form of DNA induced by spermidine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

Melting and premelting phenomenon in DNA by laser Raman scattering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

Counterion-induced condensation of deoxyribonucleic acid. A light-scattering study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

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Structural analysis of spermine and magnesium ion binding to yeast phenylalanine transfer RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

Raman spectral studies of nucleic acids. 18. Kinetics of hydrogen-deuterium exchange in guanosine 5'-monophosphate and guanosine 3':5'-monophosphate determined by laser-Raman spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

4 July 2018

23Na-NMR investigations of counterion exchange reactions of helical DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=110699

30 October 2018

DNA condensation with polyamines I. Spectroscopic studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/10954608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Equilibrium dialysis studies of polyamine binding to DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/10954608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ionic and structural effects on the thermal helix-coil transition of DNA complexed with natural and synthetic polyamines

1 reference

https://pubmed.ncbi.nlm.nih.gov/10954608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dynamics of DNA condensation

1 reference

https://pubmed.ncbi.nlm.nih.gov/10954608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nuclear magnetic resonance studies of polyamine binding to a defined DNA sequence

1 reference

https://pubmed.ncbi.nlm.nih.gov/10954608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence-dependent effects of spermine on the thermodynamics of the B-DNA to Z-DNA transition

1 reference

https://pubmed.ncbi.nlm.nih.gov/10954608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interaction of an N-methylated polyamine analogue, hexamethonium(2+), with sodium-DNA: quantitative nitrogen-14 and sodium-23 NMR relaxation rate studies of the cation-exchange process

1 reference

https://pubmed.ncbi.nlm.nih.gov/10954608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural and electrostatic effects on binding of trivalent cations to double-stranded and single-stranded poly[d (AT)]

1 reference

https://pubmed.ncbi.nlm.nih.gov/10954608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interaction of spermine and DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/10954608

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/28.17.3379

1 reference

Europe PubMed Central

29 July 2017

1 reference

Europe PubMed Central

29 July 2017

1 reference

Europe PubMed Central

29 July 2017

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