Location analysis for the estrogen receptor-alpha reveals binding to diverse ERE sequences and widespread binding within repetitive DNA elements (Q33783157)

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English	Location analysis for the estrogen receptor-alpha reveals binding to diverse ERE sequences and widespread binding within repetitive DNA elements	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

29 July 2017

Location analysis for the estrogen receptor-alpha reveals binding to diverse ERE sequences and widespread binding within repetitive DNA elements (English)

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29 July 2017

Christopher E. Mason

1

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Christopher E Mason

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29 July 2017

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Feng-Jue Shu

2

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29 July 2017

Cheng Wang

3

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29 July 2017

Ryan M Session

4

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29 July 2017

Roland G Kallen

5

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29 July 2017

Neil Sidell

6

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29 July 2017

Tianwei Yu

7

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29 July 2017

Mei Hui Liu

8

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29 July 2017

Edwin Cheung

9

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29 July 2017

Caleb B Kallen

10

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29 July 2017

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publication date

4 January 2010

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29 July 2017

Nucleic Acids Research

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29 July 2017

38

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29 July 2017

7

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29 July 2017

2355-2368

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Europe PubMed Central

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29 July 2017

H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Genomic antagonism between retinoic acid and estrogen signaling in breast cancer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Histone H2A.Z is essential for estrogen receptor signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Diversity and complexity in DNA recognition by transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Cistromics of hormone-dependent cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Coactivator function defines the active estrogen receptor alpha cistrome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

ChIP-Seq of ERalpha and RNA polymerase II defines genes differentially responding to ligands

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Two estrogen response element sequences near the PCNA gene are not responsible for its estrogen-enhanced expression in MCF7 cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Unique ERalpha cistromes control cell type-specific gene regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Non-classical genomic estrogen receptor (ER)/specificity protein and ER/activating protein-1 signaling pathways

1 reference

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4 July 2018

Genomic analysis of estrogen cascade reveals histone variant H2A.Z associated with breast cancer progression

1 reference

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4 July 2018

Ligand structure-dependent activation of estrogen receptor alpha/Sp by estrogens and xenoestrogens.

1 reference

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4 July 2018

Transposable elements and the evolution of regulatory networks

1 reference

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4 July 2018

Interaction of the glucocorticoid receptor with the chromatin landscape

1 reference

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4 July 2018

DNA oxidation as triggered by H3K9me2 demethylation drives estrogen-induced gene expression

1 reference

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4 July 2018

Mechanisms of primary and secondary estrogen target gene regulation in breast cancer cells

1 reference

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4 July 2018

A unified classification system for eukaryotic transposable elements

1 reference

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4 July 2018

Long-range activation of GREB1 by estrogen receptor via three distal consensus estrogen-responsive elements in breast cancer cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Whole-genome cartography of estrogen receptor alpha binding sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Repetitive sequences in complex genomes: structure and evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Regulation of GREB1 transcription by estrogen receptor alpha through a multipartite enhancer spread over 20 kb of upstream flanking sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Sensitive ChIP-DSL technology reveals an extensive estrogen receptor alpha-binding program on human gene promoters.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Widespread Alu repeat-driven expansion of consensus DR2 retinoic acid response elements during primate evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Genome-wide analysis of estrogen receptor binding sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Extensive low-affinity transcriptional interactions in the yeast genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Estrogen carcinogenesis in breast cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Estrogen receptor target gene: an evolving concept

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

From the Cover: Location analysis of estrogen receptor alpha target promoters reveals that FOXA1 defines a domain of the estrogen response

1 reference

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4 July 2018

From the margins of the genome: mobile elements shape primate evolution

1 reference

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4 July 2018

Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1

1 reference

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4 July 2018

Identification of estrogen-responsive genes using a genome-wide analysis of promoter elements for transcription factor binding sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Mechanisms of estrogen receptor signaling: convergence of genomic and nongenomic actions on target genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Computational method for discovery of estrogen responsive genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Evolutionary impact of human Alu repetitive elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Evolution and distribution of RNA polymerase II regulatory sites from RNA polymerase III dependant mobile Alu elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Transcriptional complexes engaged by apo-estrogen receptor-alpha isoforms have divergent outcomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Nuclear receptor-mediated transactivation through interaction with Sp proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Estrogen receptor-dependent activation of AP-1 via non-genomic signalling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Anatomy of the estrogen response element

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

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Genomic targets of nuclear estrogen receptors

1 reference

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4 July 2018

Genome-wide identification of high-affinity estrogen response elements in human and mouse

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Coregulator function: a key to understanding tissue specificity of selective receptor modulators

1 reference

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A novel immortalized human endometrial stromal cell line with normal progestational response

1 reference

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4 July 2018

ERGDB: Estrogen Responsive Genes Database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Alteration of large-scale chromatin structure by estrogen receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Molecular determinants for the tissue specificity of SERMs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Estrogen response elements alter coactivator recruitment through allosteric modulation of estrogen receptor beta conformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Estrogen receptor interaction with estrogen response elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Allosteric modulation of estrogen receptor conformation by different estrogen response elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Rapid actions of plasma membrane estrogen receptors

1 reference

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4 July 2018

Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription

1 reference

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4 July 2018

Nuclear receptors: coactivators, corepressors and chromatin remodeling in the control of transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

The estrogen receptor enhances AP-1 activity by two distinct mechanisms with different requirements for receptor transactivation functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

NMDA receptor type 2D gene as target for estrogen receptor in the brain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Estrogen response elements function as allosteric modulators of estrogen receptor conformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Differential ligand activation of estrogen receptors ERalpha and ERbeta at AP1 sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

BRCA1 expression is not directly responsive to estrogen

1 reference

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4 July 2018

The crystal structure of the estrogen receptor DNA-binding domain bound to DNA: how receptors discriminate between their response elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Estrogen receptor-Sp1 complexes mediate estrogen-induced cathepsin D gene expression in MCF-7 human breast cancer cells.

1 reference

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4 July 2018

Identification of a new subclass of Alu DNA repeats which can function as estrogen receptor-dependent transcriptional enhancers

1 reference

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4 July 2018

Sequence homologies in the region preceding the transcription initiation site of the liver estrogen-responsive vitellogenin and apo-VLDLII genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

A 13 bp palindrome is a functional estrogen responsive element and interacts specifically with estrogen receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

4 July 2018

Using TESS to predict transcription factor binding sites in DNA sequence

1 reference

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30 October 2018

DNA recognition by the oestrogen receptor: from solution to the crystal

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

30 October 2018

Analysis of estrogen receptor alpha-Sp1 interactions in breast cancer cells by fluorescence resonance energy transfer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

30 October 2018

Nonrandom distribution of alu elements in genes of various functional categories: insight from analysis of human chromosomes 21 and 22.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2853111

30 October 2018

Estrogen receptor/Sp1 complexes are required for induction of cad gene expression by 17beta-estradiol in breast cancer cells

1 reference

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30 October 2018

The cocrystal structures of two zinc-stabilized DNA-binding domains illustrate different ways of achieving sequence-specific DNA recognition.

1 reference

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30 October 2018

Interaction of estrogen receptors alpha and beta with estrogen response elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/20047966

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The oestrogen receptor regulates NFκB and AP-1 activity in a cell-specific manner

1 reference

https://pubmed.ncbi.nlm.nih.gov/20047966

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence Requirements for Estrogen Receptor Binding to Estrogen Response Elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/20047966

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Estrogen receptor affinity and location of consensus and imperfect estrogen response elements influence transcription activation of simplified promoters

1 reference

https://pubmed.ncbi.nlm.nih.gov/20047966

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Estrogen inducibility of c-Ha-ras transcription in breast cancer cells. Identification of functional estrogen-responsive transcriptional regulatory elements in exon 1/intron 1 of the c-Ha-ras gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/20047966

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1093/NAR/GKP1188

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 July 2017

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