A mutant spacer sequence between -35 and -10 elements makes the Plac promoter hyperactive and cAMP receptor protein-independent (Q33781481)

29 July 2017

A mutant spacer sequence between -35 and -10 elements makes the Plac promoter hyperactive and cAMP receptor protein-independent (English)

1 reference

29 July 2017

Mofang Liu

1

1 reference

29 July 2017

Michael Tolstorukov

2

1 reference

29 July 2017

Victor Zhurkin

3

1 reference

29 July 2017

Susan Garges

4

1 reference

29 July 2017

Sankar Adhya

5

1 reference

29 July 2017

language of work or name

English

0 references

publication date

26 April 2004

1 reference

Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

1 reference

29 July 2017

101

1 reference

29 July 2017

18

1 reference

29 July 2017

6911-6916

1 reference

describes a project that uses

29 July 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC406441/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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Kinetics of transcription initiation at lacP1. Multiple roles of cyclic AMP receptor protein

4 July 2018

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Thermoirreversible and Thermoreversible Promoter Opening by Two Escherichia coli RNA Polymerase Holoenzymes

4 July 2018

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Views of transcription initiation

4 July 2018

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Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

4 July 2018

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Aromatic amino acids in region 2.3 of Escherichia coli sigma 70 participate collectively in the formation of an RNA polymerase-promoter open complex

4 July 2018

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DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study

4 July 2018

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Protein-nucleic acid interactions during open complex formation investigated by systematic alteration of the protein and DNA binding partners

4 July 2018

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DNA bendability--a novel feature in E. coli promoter recognition.

4 July 2018

1 reference

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Escherichia coli promoters with UP elements of different strengths: modular structure of bacterial promoters.

4 July 2018

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DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

4 July 2018

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Identification of an UP element consensus sequence for bacterial promoters

4 July 2018

1 reference

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The -16 region of Bacillus subtilis and other gram-positive bacterial promoters

4 July 2018

1 reference

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RNA polymerase-promoter interactions: the comings and goings of RNA polymerase

4 July 2018

1 reference

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DNA bending: the prevalence of kinkiness and the virtues of normality

4 July 2018

1 reference

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Region 2.5 of the Escherichia coli RNA polymerase sigma70 subunit is responsible for the recognition of the 'extended-10' motif at promoters

4 July 2018

1 reference

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Influence of Mg2+ and temperature on formation of the transcription bubble

4 July 2018

1 reference

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Functional characterization of roles of GalR and GalS as regulators of the gal regulon

4 July 2018

1 reference

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Base-specific recognition of the nontemplate strand of promoter DNA by E. coli RNA polymerase

4 July 2018

1 reference

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Analysis of the spacer DNA between the cyclic AMP receptor protein binding site and the lac promoter

4 July 2018

1 reference

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Compilation of E. coli mRNA promoter sequences

4 July 2018

1 reference

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Two open complexes and a requirement for Mg2+ to open the lambda PR transcription start site

4 July 2018

1 reference

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Promoter resurrection by activators--a minireview

4 July 2018

1 reference

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Transcriptional regulation by cAMP and its receptor protein

4 July 2018

1 reference

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Pivotal role of amino acid at position 138 in the allosteric hinge reorientation of cAMP receptor protein

4 July 2018

1 reference

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A third recognition element in bacterial promoters: DNA binding by the alpha subunit of RNA polymerase

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406441

A promoter melting region in the primary sigma factor of Bacillus subtilis. Identification of functionally important aromatic amino acids

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406441

Compilation and analysis of Bacillus subtilis sigma A-dependent promoter sequences: evidence for extended contact between RNA polymerase and upstream promoter DNA.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406441

Open complex formation by Escherichia coli RNA polymerase: the mechanism of polymerase-induced strand separation of double helical DNA

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406441

Mapping of single-stranded regions in duplex DNA at the sequence level: single-strand-specific cytosine methylation in RNA polymerase-promoter complexes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406441

E. coli RNA polymerase interacts homologously with two different promoters

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406441

Mechanism and control of transcription initiation in prokaryotes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406441

Analysis of E. coli promoter sequences

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406441

Structure and function of bacterial sigma factors

4 July 2018

1 reference

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Properties of lac P2 in vivo and in vitro. An overlapping RNA polymerase binding site within the lactose promoter.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406441

KMnO4 as a probe for lac promoter DNA melting and mechanism in vivo

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406441

A mutant Escherichia coli sigma 70 subunit of RNA polymerase with altered promoter specificity

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406441

Mutation changing the specificity of an RNA polymerase sigma factor.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406441

Changes in conserved region 2 of Escherichia coli sigma 70 affecting promoter recognition

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406441

Local variability and base sequence effects in DNA crystal structures.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406441

Static and statistical bending of DNA evaluated by Monte Carlo simulations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406441

High resolution proton nuclear magnetic resonance investigation of the structural and dynamic properties of d(C15A15)-d(T15G15).

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406441

Transmission of stability (telestability) in deoxyribonucleic acid. Physical and enzymatic studies on the duplex block polymer d(C15A15) - d(T15G15)

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406441

Promoter recognition by Escherichia coli RNA polymerase. Effects of single base pair deletions and insertions in the spacer DNA separating the -10 and -35 regions are dependent on spacer DNA sequence.

4 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0401929101

Initiation of DNA-dependent RNA synthesis and the effect of heparin on RNA polymerase.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0401929101

GalR-mediated repression and activation of hybrid lacUV5 promoter: differential contacts with RNA polymerase

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15118087

12 December 2020

inferred from PubMed ID database lookup

Altered promoter recognition by mutant forms of the sigma 70 subunit of Escherichia coli RNA polymerase

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15118087

12 December 2020

inferred from PubMed ID database lookup

RapA, a novel RNA polymerase-associated protein, is a bacterial homolog of SWI2/SNF2

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15118087

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1073/PNAS.0401929101

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference