Latest folding game results: protein A barely frustrates computationalists (Q33780886)

29 July 2017

Latest folding game results: protein A barely frustrates computationalists (English)

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29 July 2017

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1

Peter G Wolynes

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PubMed ID

15123824

29 July 2017

language of work or name

English

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publication date

27 April 2004

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Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

2

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based on heuristic

inferred from page(s)

published in

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29 July 2017

101

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29 July 2017

18

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29 July 2017

6837-6838

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Testing protein-folding simulations by experiment: B domain of protein A.

29 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

Folding a protein in a computer: An atomic description of the folding/unfolding of protein A

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

Critical assessment of methods of protein structure prediction (CASP)-round V.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

The present view of the mechanism of protein folding

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

Understanding protein folding with energy landscape theory. Part II: Quantitative aspects

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

An affibody in complex with a target protein: Structure and coupled folding

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

Absolute comparison of simulated and experimental protein-folding dynamics

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

An atomically detailed study of the folding pathways of protein A with the stochastic difference equation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

A structure-based method for derivation of all-atom potentials for protein folding

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

From folding theories to folding proteins: a review and assessment of simulation studies of protein folding and unfolding

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

Fast kinetics and mechanisms in protein folding

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

Staphylococcal protein A: unfolding pathways, unfolded states, and differences between the B and E domains

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

Salt-induced detour through compact regions of the protein folding landscape

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

High-resolution solution NMR structure of the Z domain of staphylococcal protein A

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

Exploring the folding free energy surface of a three-helix bundle protein

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

Absence of a stable intermediate on the folding pathway of protein A.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

Monte Carlo simulations of protein folding. II. Application to protein A, ROP, and crambin

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

Funnels, pathways, and the energy landscape of protein folding: a synthesis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

Toward an outline of the topography of a realistic protein-folding funnel

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

Crystallographic refinement and atomic models of a human Fc fragment and its complex with fragment B of protein A from Staphylococcus aureus at 2.9- and 2.8-A resolution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

A synthetic IgG-binding domain based on staphylococcal protein A.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

Three-dimensional solution structure of the B domain of staphylococcal protein A: comparisons of the solution and crystal structures

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

Protein Folding: A Perspective from Theory and Experiment.

4 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402034101

Application of the diffusion-collision model to the folding of three-helix bundle proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402034101

Protein folding funnels: the nature of the transition state ensemble

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402034101

Backbone dynamics, fast folding, and secondary structure formation in helical proteins and peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402034101

Protein folding mechanisms and the multidimensional folding funnel.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

30 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402034101

The role of sidechain packing and native contact interactions in folding: Discontinuous molecular dynamics folding simulations of an all-atom Gō model of fragment B of Staphylococcal protein A

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402034101

Folding of a small helical protein using hydrogen bonds and hydrophobicity forces

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402034101

Interpreting the folding kinetics of helical proteins

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406427

First-principles calculation of the folding free energy of a three-helix bundle protein

30 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402034101

Ab initio folding of helix bundle proteins using molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402034101

Characterization of the folding kinetics of a three-helix bundle protein via a minimalist Langevin model

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402034101

Local conformational signals and the statistical thermodynamics of collapsed helical proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0402034101

21 January 2018

Identifiers

DOI

10.1073/PNAS.0402034101

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference

PubMed ID

15123824