Ribonucleotide reduction - horizontal transfer of a required function spans all three domains (Q33767059)

29 July 2017

Ribonucleotide reduction - horizontal transfer of a required function spans all three domains (English)

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29 July 2017

4

Britt-Marie Sjöberg

1 reference

29 July 2017

2

Simonetta Gribaldo

1 reference

29 July 2017

Daniel Lundin

1

1 reference

29 July 2017

Eduard Torrents

series ordinal

3

1 reference

29 July 2017

Anthony M Poole

series ordinal

5

1 reference

29 July 2017

10 December 2010

1 reference

29 July 2017

BMC Evolutionary Biology

1 reference

29 July 2017

10

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29 July 2017

383

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-10-383

29 July 2017

0 references

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RNRdb, a curated database of the universal enzyme family ribonucleotide reductase, reveals a high level of misannotation in sequences deposited to Genbank

22 June 2018

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22 June 2018

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22 June 2018

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22 June 2018

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Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"

22 June 2018

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22 June 2018

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22 June 2018

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22 June 2018

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22 June 2018

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Dendroscope: An interactive viewer for large phylogenetic trees

22 June 2018

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High catalytic activity achieved with a mixed manganese-iron site in protein R2 of Chlamydia ribonucleotide reductase

22 June 2018

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A manganese(IV)/iron(III) cofactor in Chlamydia trachomatis ribonucleotide reductase

22 June 2018

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Evolutionary origins of the eukaryotic shikimate pathway: gene fusions, horizontal gene transfer, and endosymbiotic replacements

22 June 2018

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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

22 June 2018

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Ribonucleotide reductase modularity: Atypical duplication of the ATP-cone domain in Pseudomonas aeruginosa

22 June 2018

1 reference

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Leeuwenhoekiella blandensis sp. nov., a genome-sequenced marine member of the family Flavobacteriaceae

22 June 2018

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Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative

22 June 2018

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Ribonucleotide reductases

22 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea

22 June 2018

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Application of phylogenetic networks in evolutionary studies

22 June 2018

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Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis

22 June 2018

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Nitratiruptor tergarcus gen. nov., sp. nov. and Nitratifractor salsuginis gen. nov., sp. nov., nitrate-reducing chemolithoautotrophs of the epsilon-Proteobacteria isolated from a deep-sea hydrothermal system in the Mid-Okinawa Trough.

22 June 2018

1 reference

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Lateral gene transfer in eukaryotes

22 June 2018

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Two proteins mediate class II ribonucleotide reductase activity in Pseudomonas aeruginosa: expression and transcriptional analysis of the aerobic enzymes

22 June 2018

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ProbCons: Probabilistic consistency-based multiple sequence alignment

22 June 2018

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The radical site in chlamydial ribonucleotide reductase defines a new R2 subclass

22 June 2018

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Microorganisms resistant to free-living amoebae

22 June 2018

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The genome sequence of the extreme thermophile Thermus thermophilus

22 June 2018

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Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes

22 June 2018

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

22 June 2018

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SWISS-MODEL: An automated protein homology-modeling server

22 June 2018

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Evolutionary analyses of the small subunit of glutamate synthase: gene order conservation, gene fusions, and prokaryote-to-eukaryote lateral gene transfers

22 June 2018

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Ancient phylogenetic relationships

22 June 2018

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Ribonucleotide reductases: divergent evolution of an ancient enzyme.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

The crystal structure of class II ribonucleotide reductase reveals how an allosterically regulated monomer mimics a dimer

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Ribonucleotide reductases: the evolution of allosteric regulation

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Structural basis for allosteric substrate specificity regulation in anaerobic ribonucleotide reductases

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

22 June 2018

Earth's early atmosphere

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

A ribonucleotide reductase gene involved in a p53-dependent cell-cycle checkpoint for DNA damage

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Dynamics of bacterial community composition and activity during a mesocosm diatom bloom

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Thermotoga heats up lateral gene transfer

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Ribonucleotide reduction in Pseudomonas species: simultaneous presence of active enzymes from different classes

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Preservation of duplicate genes by complementary, degenerative mutations

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Ribonucleotide reductases

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Psychroflexus torquis gen. nov., sp. nov., a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al. 1993) as Psychroflexus gondwanense gen. nov., comb. nov.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Polaribacter gen. nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov. and P. filamentus sp. nov., gas vacuolate polar marine bacteria of the Cytophaga-Flavobacterium-Bacteroides group and reclassification of 'Flectobacillus g

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Psychromonas antarcticus gen. nov., sp. nov., A new aerotolerant anaerobic, halophilic psychrophile isolated from pond sediment of the McMurdo ice shelf, antarctica

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

The evolution of ribonucleotide reduction

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Evolution of energetic metabolism: the respiration-early hypothesis

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Structure of ribonucleotide reductase protein R1

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Two genes differentially regulated in the cell cycle and by DNA-damaging agents encode alternative regulatory subunits of ribonucleotide reductase

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Elevation of Francisella philomiragia subsp. noatunensis Mikalsen et al. (2007) to Francisella noatunensis comb. nov. [syn. Francisella piscicida Ottem et al. (2008) syn. nov.] and characterization of Francisella noatunensis subsp. orientalis subsp.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

The multiple evolutionary histories of dioxygen reductases: Implications for the origin and evolution of aerobic respiration.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Evolution of filamentous plant pathogens: gene exchange across eukaryotic kingdoms.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Modern mRNA proofreading and repair: clues that the last universal common ancestor possessed an RNA genome?

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Structural mechanism of allosteric substrate specificity regulation in a ribonucleotide reductase

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

The evolution of the ribonucleotide reductases: much ado about oxygen.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

30 October 2018

Do proteins predate DNA?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Bacteriophage T4 anaerobic ribonucleotide reductase contains a stable glycyl radical at position 580.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

From RNA to DNA, why so many ribonucleotide reductases?

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Mass spectrometric determination of the radical scission site in the anaerobic ribonucleotide reductase of Escherichia coli

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Euglena gracilisRibonucleotide Reductase

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3019208

Methyl-RNA: an evolutionary bridge between RNA and DNA?

10 December 2018

1 reference

12 December 2020

Respiratory chains in the last common ancestor of living organisms

1 reference

12 December 2020

Adapting to environmental changes using specialized paralogs

1 reference

12 December 2020

The slow road to the eukaryotic genome

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2148-10-383

1 reference

Dimensions Publication ID

29 July 2017

0 references

1 reference

29 July 2017

1 reference