Accessing DNA damage in chromatin: insights from transcription (Q33725692)

28 July 2017

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title

Accessing DNA damage in chromatin: insights from transcription (English)

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28 July 2017

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Meijer M

1

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PubMed ID

10472186

28 July 2017

Smerdon MJ

series ordinal

2

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PubMed ID

10472186

28 July 2017

language of work or name

English

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publication date

1 July 1999

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28 July 2017

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28 July 2017

21

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28 July 2017

596-603

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28 July 2017

7

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Remodeling chromatin structures for transcription: what happens to the histones?

28 July 2017

1 reference

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Histone acetylation: chromatin in action

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

What's up and down with histone deacetylation and transcription?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Repression of GCN5 histone acetyltransferase activity via bromodomain-mediated binding and phosphorylation by the Ku-DNA-dependent protein kinase complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Yeast SNF/SWI transcriptional activators and the SPT/SIN chromatin connection

21 January 2018

1 reference

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Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Nucleosome disruption and enhancement of activator binding by a human SW1/SNF complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

The yeast SWI-SNF complex facilitates binding of a transcriptional activator to nucleosomal sites in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Multiple SWItches to turn on chromatin?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Persistent site-specific remodeling of a nucleosome array by transient action of the SWI/SNF complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Perturbation of nucleosome core structure by the SWI/SNF complex persists after its detachment, enhancing subsequent transcription factor binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

SWI/SNF stimulates the formation of disparate activator-nucleosome complexes but is partially redundant with cooperative binding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Components of the human SWI/SNF complex are enriched in active chromatin and are associated with the nuclear matrix.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Roles of SWI1, SWI2, and SWI3 proteins for transcriptional enhancement by steroid receptors

21 January 2018

1 reference

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Glucocorticoid receptor-glucocorticoid response element binding stimulates nucleosome disruption by the SWI/SNF complex

21 January 2018

1 reference

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Role for ADA/GCN5 products in antagonizing chromatin-mediated transcriptional repression

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

RSC, an essential, abundant chromatin-remodeling complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Sfh1p, a component of a novel chromatin-remodeling complex, is required for cell cycle progression

21 January 2018

1 reference

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Interaction of a Swi3 homolog with Sth1 provides evidence for a Swi/Snf-related complex with an essential function in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Purification and properties of an ATP-dependent nucleosome remodeling factor.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

ISWI, a member of the SWI2/SNF2 ATPase family, encodes the 140 kDa subunit of the nucleosome remodeling factor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

The yeast SNF2/SWI2 protein has DNA-stimulated ATPase activity required for transcriptional activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Role of histone tails in nucleosome remodeling by Drosophila NURF.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Chromatin-remodelling factor CHRAC contains the ATPases ISWI and topoisomerase II.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

21 January 2018

1 reference

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Distribution and repair of photolesions in DNA: genetic consequences and the role of sequence context

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Relationships between DNA repair and transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall.

21 January 2018

1 reference

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Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Site-specific DNA repair at the nucleosome level in a yeast minichromosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Preferential repair of cyclobutane pyrimidine dimers in the transcribed strand of a gene in yeast chromosomes and plasmids is dependent on transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Preferential repair of DNA damage on the transcribed strand of the human metallothionein genes requires RNA polymerase II.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Escherichia coli mfd mutant deficient in "mutation frequency decline" lacks strand-specific repair: in vitro complementation with purified coupling factor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Molecular mechanism of transcription-repair coupling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

ERCC6, a member of a subfamily of putative helicases, is involved in Cockayne's syndrome and preferential repair of active genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

The Cockayne syndrome group A gene encodes a WD repeat protein that interacts with CSB protein and a subunit of RNA polymerase II TFIIH

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Molecular cloning and characterization of Saccharomyces cerevisiae RAD28, the yeast homolog of the human Cockayne syndrome A (CSA) gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Human transcription-repair coupling factor CSB/ERCC6 is a DNA-stimulated ATPase but is not a helicase and does not disrupt the ternary transcription complex of stalled RNA polymerase II

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Recruitment of the putative transcription-repair coupling factor CSB/ERCC6 to RNA polymerase II elongation complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

RNA polymerase II stalled at a thymine dimer: footprint and effect on excision repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Transcript cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the DNA template

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Cockayne syndrome: defective repair of transcription?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Yeast RNA polymerase II transcription in vitro is inhibited in the presence of nucleotide excision repair: complementation of inhibition by Holo-TFIIH and requirement for RAD26.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Human cyclin-dependent kinase-activating kinase exists in three distinct complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Reaction mechanism of human DNA repair excision nuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Different forms of TFIIH for transcription and DNA repair: holo-TFIIH and a nucleotide excision repairosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Nucleotide excision repair in yeast is mediated by sequential assembly of repair factors and not by a pre-assembled repairosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Yeast Rad7-Rad16 complex, specific for the nucleotide excision repair of the nontranscribed DNA strand, is an ATP-dependent DNA damage sensor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Recycling of the general transcription factors during RNA polymerase II transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

DNA damage recognition by XPA protein promotes efficient recruitment of transcription factor II H.

21 January 2018

1 reference

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Transitions in the coupling of transcription and nucleotide excision repair within RNA polymerase II-transcribed genes of Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

The transcription-repair coupling factor CSA is required for efficient repair only during the elongation stages of RNA polymerase II transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Formation and processing of UV photoproducts: effects of DNA sequence and chromatin environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

21 January 2018

Gene specific DNA repair

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Excision repair at the level of the nucleotide in the Saccharomyces cerevisiae MFA2 gene: mapping of where enhanced repair in the transcribed strand begins or ends and identification of only a partial rad16 requisite for repairing upstream control s

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Preferential DNA Repair in Human Cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Chromatin structure modulates DNA repair by photolyase in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Nucleosome structure and positioning modulate nucleotide excision repair in the non-transcribed strand of an active gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Site-specific repair of cyclobutane pyrimidine dimers in a positioned nucleosome by photolyase and T4 endonuclease V in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

UV induced (6-4) photoproducts are distributed differently than cyclobutane dimers in nucleosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Chromatin assembly coupled to DNA repair: a new role for chromatin assembly factor I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Initiation and bidirectional propagation of chromatin assembly from a target site for nucleotide excision repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

The RAD7 and RAD16 genes, which are essential for pyrimidine dimer removal from the silent mating type loci, are also required for repair of the nontranscribed strand of an active gene in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Transcription-coupled and global genome repair in the Saccharomyces cerevisiae RPB2 gene at nucleotide resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

The RAD7, RAD16, and RAD23 genes of Saccharomyces cerevisiae: requirement for transcription-independent nucleotide excision repair in vitro and interactions between the gene products

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Assessing the requirements for nucleotide excision repair proteins of Saccharomyces cerevisiae in an in vitro system

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Interaction of the yeast RAD7 and SIR3 proteins: implications for DNA repair and chromatin structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Identification of RAD16, a yeast excision repair gene homologous to the recombinational repair gene RAD54 and to the SNF2 gene involved in transcriptional activation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

RNA polymerase II holoenzyme contains SWI/SNF regulators involved in chromatin remodeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

DNA repair within nucleosome cores of UV-irradiated human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Unfolding of nucleosome cores dramatically changes the distribution of ultraviolet photoproducts in DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

Distribution within chromatin of deoxyribonucleic acid repair synthesis occurring at different times after ultraviolet radiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291521-1878%28199907%2921%3A7%3C596%3A%3AAID-BIES8%3E3.0.CO%3B2-5

10.1002/(SICI)1521-1878(199907)21:7<596::AID-BIES8>3.0.CO;2-5

21 January 2018

Identifiers

DOI

1 reference

28 July 2017

1 reference

PubMed ID

10472186