Functional interplay between chromatin remodeling complexes RSC, SWI/SNF and ISWI in regulation of yeast heat shock genes (Q33719389)

28 July 2017

Functional interplay between chromatin remodeling complexes RSC, SWI/SNF and ISWI in regulation of yeast heat shock genes (English)

1 reference

28 July 2017

T Y Erkina

1

1 reference

28 July 2017

Y Zou

2

1 reference

28 July 2017

S Freeling

3

1 reference

28 July 2017

V I Vorobyev

4

1 reference

28 July 2017

A M Erkine

5

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28 July 2017

language of work or name

English

0 references

publication date

16 December 2009

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28 July 2017

Nucleic Acids Research

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28 July 2017

38

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28 July 2017

1441-1449

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28 July 2017

5

1 reference

Nucleosome retention and the stochastic nature of promoter chromatin remodeling for transcription

28 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Stress-dependent dynamics of global chromatin remodeling in yeast: dual role for SWI/SNF in the heat shock stress response

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Different requirements of the SWI/SNF complex for robust nucleosome displacement at promoters of heat shock factor and Msn2- and Msn4-regulated heat shock genes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

RSC regulates nucleosome positioning at Pol II genes and density at Pol III genes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Exposing the core promoter is sufficient to activate transcription and alter coactivator requirement at RNR3.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

The ins and outs of ATP-dependent chromatin remodeling in budding yeast: biophysical and proteomic perspectives.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Mechanisms of ATP dependent chromatin remodeling

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Activation of Saccharomyces cerevisiae HIS3 results in Gcn4p-dependent, SWI/SNF-dependent mobilization of nucleosomes over the entire gene

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Isw1 functions in parallel with the NuA4 and Swr1 complexes in stress-induced gene repression

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Antagonistic forces that position nucleosomes in vivo.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Rsc4 connects the chromatin remodeler RSC to RNA polymerases

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

The ISWI and CHD1 chromatin remodelling activities influence ADH2 expression and chromatin organization

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Domain-wide displacement of histones by activated heat shock factor occurs independently of Swi/Snf and is not correlated with RNA polymerase II density

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

ATP-dependent chromatin remodeling

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Evidence for histone eviction in trans upon induction of the yeast PHO5 promoter

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Evidence for distinct mechanisms facilitating transcript elongation through chromatin in vivo

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Genome-wide analysis of the biology of stress responses through heat shock transcription factor

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Dynamic chromatin alterations triggered by natural and synthetic activation domains

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Yeast Isw1p forms two separable complexes in vivo

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Evidence that Swi/Snf directly represses transcription in S. cerevisiae

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

The genome-wide localization of Rsc9, a component of the RSC chromatin-remodeling complex, changes in response to stress

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Transcription activator interactions with multiple SWI/SNF subunits.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Direct imaging of human SWI/SNF-remodeled mono- and polynucleosomes by atomic force microscopy employing carbon nanotube tips

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Rapid and reliable protein extraction from yeast

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Transcriptional activation in yeast cells lacking transcription factor IIA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Cooperative binding of heat shock factor to the yeast HSP82 promoter in vivo and in vitro

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

The histone H3-like TAF is broadly required for transcription in yeast

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Sth1p, a Saccharomyces cerevisiae Snf2p/Swi2p homolog, is an essential ATPase in RSC and differs from Snf/Swi in its interactions with histones and chromatin-associated proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Activated transcription independent of the RNA polymerase II holoenzyme in budding yeast

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Transcriptional activation independent of TFIIH kinase and the RNA polymerase II mediator in vivo.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Heat shock factor gains access to the yeast HSC82 promoter independently of other sequence-specific factors and antagonizes nucleosomal repression of basal and induced transcription

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

A new efficient gene disruption cassette for repeated use in budding yeast

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Dynamic protein-DNA architecture of a yeast heat shock promoter

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Constitutive binding of yeast heat shock factor to DNA in vivo

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Genomic footprinting of the yeast HSP82 promoter reveals marked distortion of the DNA helix and constitutive occupancy of heat shock and TATA elements

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

An essential Saccharomyces cerevisiae gene homologous to SNF2 encodes a helicase-related protein in a new family

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2836563

Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions

28 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1130

SWI/SNF is required for transcriptional memory at the yeast GAL gene cluster

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1130

Displacement of histones at promoters of Saccharomyces cerevisiae heat shock genes is differentially associated with histone H3 acetylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1130

Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1130

Broad, but not universal, transcriptional requirement for yTAFII17, a histone H3-like TAFII present in TFIID and SAGA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1130

Evidence for nucleosome depletion at active regulatory regions genome-wide

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1130

Two functionally distinct forms of the RSC nucleosome-remodeling complex, containing essential AT hook, BAH, and bromodomains

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1130

Isw1 chromatin remodeling ATPase coordinates transcription elongation and termination by RNA polymerase II.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1130

Dependency of ISW1a chromatin remodeling on extranucleosomal DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1130

Heat shock factor is regulated differently in yeast and HeLa cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP1130

The heat shock response in yeast: differential regulations and contributions of the Msn2p/Msn4p and Hsf1p regulons

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20015969

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Redundancy of chromatin remodeling pathways for the induction of the yeast PHO5 promoter in vivo

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20015969

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKP1130

1 reference

28 July 2017

1 reference

28 July 2017

1 reference