Host imprints on bacterial genomes--rapid, divergent evolution in individual patients (Q33701690)

28 July 2017

Host imprints on bacterial genomes--rapid, divergent evolution in individual patients (English)

1 reference

28 July 2017

0 references

1 reference

Heiko Liesegang

4

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Ulrich Dobrindt

Ulrich Dobrindt

15

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Rolf Daniel

Rolf Daniel

11

0 references

Jörg Hacker

13

Jörg Hacker

1 reference

28 July 2017

3

Björn Wullt

1 reference

28 July 2017

1

Jaroslaw Zdziarski

1 reference

28 July 2017

9

Michael Hecker

1 reference

28 July 2017

5

Dvora Biran

1 reference

28 July 2017

Elzbieta Brzuszkiewicz

2

Elzbieta Brzuszkiewicz

1 reference

28 July 2017

14

Catharina Svanborg

1 reference

28 July 2017

10

Eliora Z Ron

1 reference

28 July 2017

Birgit Voigt

6

1 reference

28 July 2017

Jenny Grönberg-Hernandez

7

1 reference

28 July 2017

Bryndis Ragnarsdottir

8

1 reference

28 July 2017

Gerhard Gottschalk

12

1 reference

28 July 2017

26 August 2010

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28 July 2017

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28 July 2017

6

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28 July 2017

8

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28 July 2017

e1001078

1 reference

Creative Commons Attribution 4.0 International

28 July 2017

start time

26 August 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Toll-like receptor 4 promoter polymorphisms: common TLR4 variants may protect against severe urinary tract infection

1 reference

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Different effects of transcriptional regulators MarA, SoxS and Rob on susceptibility of Escherichia coli to cationic antimicrobial peptides (CAMPs): Rob-dependent CAMP induction of the marRAB operon

14 July 2018

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Genome evolution and adaptation in a long-term experiment with Escherichia coli

14 July 2018

1 reference

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Common strategies for antigenic variation by bacterial, fungal and protozoan pathogens

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Fitness of Escherichia coli during urinary tract infection requires gluconeogenesis and the TCA cycle

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

The varieties of gene amplification, diversification and hypervariability in the human malaria parasite, Plasmodium falciparum

14 July 2018

1 reference

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Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

14 July 2018

1 reference

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Uropathogenic Escherichia coli CFT073 is adapted to acetatogenic growth but does not require acetate during murine urinary tract infection

14 July 2018

1 reference

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TLR- and CXCR1-dependent innate immunity: insights into the genetics of urinary tract infections

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Dissecting the genetic components of adaptation of Escherichia coli to the mouse gut.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Molecular basis of commensalism in the urinary tract: low virulence or virulence attenuation?

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Shiga toxin-mediated hemolytic uremic syndrome: time to change the diagnostic paradigm?

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

A genetic basis of susceptibility to acute pyelonephritis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Evolution of global regulatory networks during a long-term experiment with Escherichia coli

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Gene conversion is a convergent strategy for pathogen antigenic variation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Uropathogenic Escherichia coli outer membrane antigens expressed during urinary tract infection

14 July 2018

1 reference

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Simultaneous amino acid substitutions at antigenic sites drive influenza A hemagglutinin evolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Molecular epidemiology and dynamics of Pseudomonas aeruginosa populations in lungs of cystic fibrosis patients

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

The Escherichia coli argW-dsdCXA genetic island is highly variable, and E. coli K1 strains commonly possess two copies of dsdCXA.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: evolution during disease progression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

The Escherichia coli BarA-UvrY two-component system is a virulence determinant in the urinary tract

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Molecular characterization of the Escherichia coli asymptomatic bacteriuria strain 83972: the taming of a pathogen

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Escherichia coli, fimbriae, bacterial persistence and host response induction in the human urinary tract

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

CpxR/OmpR interplay regulates curli gene expression in response to osmolarity in Escherichia coli

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Analysis of the genome structure of the nonpathogenic probiotic Escherichia coli strain Nissle 1917

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Identification and molecular characterization of the Mg2+ stimulon of Escherichia coli

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Comprehensive studies of drug resistance mediated by overexpression of response regulators of two-component signal transduction systems in Escherichia coli

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

The Escherichia coli BarA-UvrY two-component system is needed for efficient switching between glycolytic and gluconeogenic carbon sources.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

The ERGO genome analysis and discovery system

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Evolving responsively: adaptive mutation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

A metabolic enzyme for S-nitrosothiol conserved from bacteria to humans

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Interleukin 8 receptor deficiency confers susceptibility to acute experimental pyelonephritis and may have a human counterpart.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

14 July 2018

The Staden package, 1998

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Cluster analysis and display of genome-wide expression patterns

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Escherichia coli bacteraemia in patients with and without haematological malignancies: a study of strain characters and recurrent episodes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Topological analysis of the membrane-bound glucosyltransferase, MdoH, required for osmoregulated periplasmic glucan synthesis in Escherichia coli

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

The natural history of bacteriuria in childhood

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Metal ion regulation of gene expression. Fur repressor-operator interaction at the promoter region of the aerobactin system of pColV-K30.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Activation of oxidative stress genes by mutations at the soxQ/cfxB/marA locus of Escherichia coli

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Asymptomatic bacteriuria in schoolgirls. VIII. Clinical course during a 3-year follow-up

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

Bacterial interference--is deliberate colonization with Escherichia coli 83972 an alternative treatment for patients with recurrent urinary tract infection?

14 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1001078

Escherichia coli 83972 bacteriuria protects against recurrent lower urinary tract infections in patients with incomplete bladder emptying

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1001078

Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1001078

Molecular identification of pseudouridine-metabolizing enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1001078

Isolation and comparative study of cell-free nucleic acids from human urine.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1001078

Stress-induced mutagenesis in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1001078

Experimental tests for an evolutionary trade-off between growth rate and yield in E. coli.

21 January 2018

2 references

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1001078

21 January 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

PapG-dependent adherence breaks mucosal inertia and triggers the innate host response.

30 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1001078

YACOP: Enhanced gene prediction obtained by a combination of existing methods.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2928814

SUGGESTIONS AS TO QUANTITATIVE MEASUREMENT OF RATES OF EVOLUTION

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20865122

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A study of Escherichia coli isolated from chronic urinary infection

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20865122

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PPAT.1001078

1 reference

28 July 2017

1 reference

28 July 2017

1 reference