The impact of mRNA structure on guide RNA targeting in kinetoplastid RNA editing (Q33680892)

28 July 2017

The impact of mRNA structure on guide RNA targeting in kinetoplastid RNA editing (English)

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28 July 2017

Jorge Cruz-Reyes

3

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author name string

Larissa Reifur

1

1 reference

28 July 2017

Laura E Yu

2

1 reference

28 July 2017

Michelle Vanhartesvelt

4

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28 July 2017

Donna J Koslowsky

5

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28 July 2017

language of work or name

English

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publication date

17 August 2010

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28 July 2017

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28 July 2017

5

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28 July 2017

8

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28 July 2017

e12235

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Creative Commons Attribution 4.0 International

28 July 2017

start time

17 August 2010

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

ImageQuant

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2923197/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Trypanosoma brucei ATPase subunit 6 mRNA bound to gA6-14 forms a conserved three-helical structure

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Determinants for association and guide RNA-directed endonuclease cleavage by purified RNA editing complexes from Trypanosoma brucei.

21 June 2018

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21 June 2018

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gRNA/pre-mRNA annealing and RNA chaperone activities of RBP16.

21 June 2018

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Alternative mRNA editing in trypanosomes is extensive and may contribute to mitochondrial protein diversity

21 June 2018

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RNA editing in Trypanosoma brucei requires three different editosomes

21 June 2018

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21 June 2018

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Evidence for U-tail stabilization of gRNA/mRNA interactions in kinetoplastid RNA editing

21 June 2018

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Alternative editing of cytochrome c oxidase III mRNA in trypanosome mitochondria generates protein diversity

21 June 2018

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21 June 2018

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Complex management: RNA editing in trypanosomes

21 June 2018

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RNA interference analyses suggest a transcript-specific regulatory role for mitochondrial RNA-binding proteins MRP1 and MRP2 in RNA editing and other RNA processing in Trypanosoma brucei

21 June 2018

1 reference

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Sequence and structural requirements for optimal guide RNA-directed insertional editing within Leishmania tarentolae

21 June 2018

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Studying the assembly of multicomponent protein and ribonucleoprotein complexes using surface plasmon resonance

21 June 2018

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A 100-kD complex of two RNA-binding proteins from mitochondria of Leishmania tarentolae catalyzes RNA annealing and interacts with several RNA editing components

21 June 2018

1 reference

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Kinetic studies of RNA-protein interactions using surface plasmon resonance.

21 June 2018

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Distinct functions of two RNA ligases in active Trypanosoma brucei RNA editing complexes.

21 June 2018

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RNA sequence and base pairing effects on insertion editing in Trypanosoma brucei

21 June 2018

1 reference

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Mechanism of the gBP21-mediated RNA/RNA annealing reaction: matchmaking and charge reduction

21 June 2018

1 reference

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Interactions of mRNAs and gRNAs involved in trypanosome mitochondrial RNA editing: structure probing of an mRNA bound to its cognate gRNA.

21 June 2018

1 reference

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Unique aspects of mitochondrial biogenesis in trypanosomatids

21 June 2018

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Real time kinetic studies of the interaction between folded antisense and target RNAs using surface plasmon resonance

21 June 2018

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A mRNA determinant of gRNA-directed kinetoplastid editing

21 June 2018

1 reference

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Annealing of RNA editing substrates facilitated by guide RNA-binding protein gBP21

21 June 2018

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Secondary structure prediction and in vitro accessibility of mRNA as tools in the selection of target sites for ribozymes

21 June 2018

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Mapping contacts between gRNA and mRNA in trypanosome RNA editing.

21 June 2018

1 reference

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T. brucei RNA editing: adenosine nucleotides inversely affect U-deletion and U-insertion reactions at mRNA cleavage.

21 June 2018

1 reference

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Guide RNA requirement for editing-site-specific endonucleolytic cleavage of preedited mRNA by mitochondrial ribonucleoprotein particles in Trypanosoma brucei

21 June 2018

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Purification of a functional enzymatic editing complex from Trypanosoma brucei mitochondria

21 June 2018

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Probing accessible sites for ribozymes on human acetylcholinesterase RNA.

21 June 2018

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Antisense RNA control in bacteria, phages, and plasmids

21 June 2018

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Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

21 June 2018

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Developmental aspects of uridine addition within mitochondrial transcripts of Trypanosoma brucei

21 June 2018

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The MURF3 gene of T. brucei contains multiple domains of extensive editing and is homologous to a subunit of NADH dehydrogenase

21 June 2018

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RNA editing involves indiscriminate U changes throughout precisely defined editing domains

21 June 2018

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A model for RNA editing in kinetoplastid mitochondria: "guide" RNA molecules transcribed from maxicircle DNA provide the edited information

21 June 2018

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Site-specific modification of pre-mRNA: the 2'-hydroxyl groups at the splice sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2923197

Guide RNAs for transcripts with developmentally regulated RNA editing are present in both life cycle stages of Trypanosoma brucei

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2923197

Native mRNA editing complexes from Trypanosoma brucei mitochondria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2923197

Small RNA regulators of gene expression.

21 June 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0012235

RBP16 is a multifunctional gene regulatory protein involved in editing and stabilization of specific mitochondrial mRNAs in Trypanosoma brucei

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0012235

RNA editing: a mechanism for gRNA-specified uridylate insertion into precursor mRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0012235

Substrate determinants for RNA editing and editing complex interactions at a site for full-round U insertion.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0012235

Theoretical design of antisense RNA structures substantially improves annealing kinetics and efficacy in human cells

21 January 2018

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12 December 2020

Kinetic analysis of macromolecular interactions using surface plasmon resonance biosensors

1 reference

12 December 2020

Crystal structures of T. brucei MRP1/MRP2 guide-RNA binding complex reveal RNA matchmaking mechanism

1 reference

12 December 2020

The importance of RNA structure in RNA editing and a potential proofreading mechanism for correct guide RNA:pre-mRNA binary complex formation

1 reference

12 December 2020

Cycles of progressive realignment of gRNA with mRNA in RNA editing

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12 December 2020

Developmentally regulated addition of nucleotides within apocytochrome b transcripts in Trypanosoma brucei

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12 December 2020

10.1371/JOURNAL.PONE.0012235

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DOI

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28 July 2017

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28 July 2017

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