Protein roles in group I intron RNA folding: the tyrosyl-tRNA synthetase CYT-18 stabilizes the native state relative to a long-lived misfolded structure without compromising folding kinetics (Q33618172)

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English	Protein roles in group I intron RNA folding: the tyrosyl-tRNA synthetase CYT-18 stabilizes the native state relative to a long-lived misfolded structure without compromising folding kinetics	scientific article

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Protein roles in group I intron RNA folding: the tyrosyl-tRNA synthetase CYT-18 stabilizes the native state relative to a long-lived misfolded structure without compromising folding kinetics (English)

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

protein folding

0 references

tyrosyl-tRNA synthetase

0 references

author name string

Amanda B Chadee

1

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Hari Bhaskaran

2

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Rick Russell

3

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

publication date

11 November 2009

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Journal of Molecular Biology

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

395

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

3

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

656-670

1 reference

Europe PubMed Central

PubMed publication ID

28 July 2017

Global kinetic explorer: a new computer program for dynamic simulation and fitting of kinetic data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

SHAPE analysis of long-range interactions reveals extensive and thermodynamically preferred misfolding in a fragile group I intron RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Identification and evolution of fungal mitochondrial tyrosyl-tRNA synthetases with group I intron splicing activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Structure of a tyrosyl-tRNA synthetase splicing factor bound to a group I intron RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

RNA misfolding and the action of chaperones

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

DMS footprinting of structured RNAs and RNA-protein complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Deletion of the P5abc peripheral element accelerates early and late folding steps of the Tetrahymena group I ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Structural specificity conferred by a group I RNA peripheral element

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Influence of RNA structural stability on the RNA chaperone activity of the Escherichia coli protein StpA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Crystal structure of a phage Twort group I ribozyme-product complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Crystal structure of a self-splicing group I intron with both exons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Ribozymes, the first 20 years

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

A DEAD-box protein functions as an ATP-dependent RNA chaperone in group I intron splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Function of the Neurospora crassa mitochondrial tyrosyl-tRNA synthetase in RNA splicing. Role of the idiosyncratic N-terminal extension and different modes of interaction with different group I introns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

The bI4 group I intron binds directly to both its protein splicing partners, a tRNA synthetase and maturase, to facilitate RNA splicing activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

The P5abc peripheral element facilitates preorganization of the tetrahymena group I ribozyme for catalysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

New pathways in folding of the Tetrahymena group I RNA enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Exposing the kinetic traps in RNA folding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Specificity from steric restrictions in the guanosine binding pocket of a group I ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

A preorganized active site in the crystal structure of the Tetrahymena ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Dimeric tyrosyl-tRNA synthetase from Bacillus stearothermophilus unfolds through a monomeric intermediate. A quantitative analysis under equilibrium conditions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Characterization of Neurospora mitochondrial group I introns reveals different CYT-18 dependent and independent splicing strategies and an alternative 3' splice site for an intron ORF.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Activity and thermostability of the small self-splicing group I intron in the pre-tRNA(lle) of the purple bacterium Azoarcus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Crystal structure of a group I ribozyme domain: principles of RNA packing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

RNA chaperones and the RNA folding problem

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of tetrahymena

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

A protein required for splicing group I introns in Neurospora mitochondria is mitochondrial tyrosyl-tRNA synthetase or a derivative thereof.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Sequence-specific endoribonuclease activity of the Tetrahymena ribozyme: enhanced cleavage of certain oligonucleotide substrates that form mismatched ribozyme-substrate complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Involvement of aminoacyl-tRNA synthetases and other proteins in group I and group II intron splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

The yeast mitochondrial leucyl-tRNA synthetase is a splicing factor for the excision of several group I introns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Alternative secondary structures in the 5' exon affect both forward and reverse self-splicing of the Tetrahymena intervening sequence RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Reconstitution of a group I intron self-splicing reaction with an activator RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

Exon sequences distant from the splice junction are required for efficient self-splicing of the Tetrahymena IVS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

An Analysis of the Structure of tRNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

14 July 2018

The paradoxical behavior of a highly structured misfolded intermediate in RNA folding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

30 October 2018

Visualizing induced fit in early assembly of the human signal recognition particle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

30 October 2018

Probing the folding landscape of the Tetrahymena ribozyme: commitment to form the native conformation is late in the folding pathway.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

30 October 2018

Interaction of the Neurospora crassa mitochondrial tyrosyl-tRNA synthetase (CYT-18 protein) with the group I intron P4-P6 domain. Thermodynamic analysis and the role of metal ions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

30 October 2018

A tyrosyl-tRNA synthetase suppresses structural defects in the two major helical domains of the group I intron catalytic core.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2813312

30 October 2018

Protein-dependent transition states for ribonucleoprotein assembly

1 reference

https://pubmed.ncbi.nlm.nih.gov/19913030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A tyrosyl-tRNA synthetase can function similarly to an RNA structure in the Tetrahymena ribozyme

1 reference

https://pubmed.ncbi.nlm.nih.gov/19913030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Involvement of Neurospora mitochondrial tyrosyl-tRNA synthetase in RNA splicing. A new method for purifying the protein and characterization of physical and enzymatic properties pertinent to splicing

1 reference

https://pubmed.ncbi.nlm.nih.gov/19913030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A tyrosyl-tRNA synthetase protein induces tertiary folding of the group I intron catalytic core

1 reference

https://pubmed.ncbi.nlm.nih.gov/19913030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the CYT-18 protein binding site at the junction of stacked helices in a group I intron RNA by quantitative binding assays and in vitro selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/19913030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A tyrosyl-tRNA synthetase recognizes a conserved tRNA-like structural motif in the group I intron catalytic core

1 reference

https://pubmed.ncbi.nlm.nih.gov/19913030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme

1 reference

https://pubmed.ncbi.nlm.nih.gov/19913030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Kinetic intermediates trapped by native interactions in RNA folding

1 reference

https://pubmed.ncbi.nlm.nih.gov/19913030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Assembly of an exceptionally stable RNA tertiary interface in a group I ribozyme

1 reference

https://pubmed.ncbi.nlm.nih.gov/19913030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A tyrosyl-tRNA synthetase adapted to function in group I intron splicing by acquiring a new RNA binding surface

1 reference

https://pubmed.ncbi.nlm.nih.gov/19913030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Function of tyrosyl-tRNA synthetase in splicing group I introns: an induced-fit model for binding to the P4-P6 domain based on analysis of mutations at the junction of the P4-P6 stacked helices

1 reference

https://pubmed.ncbi.nlm.nih.gov/19913030

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1016/J.JMB.2009.11.009

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Europe PubMed Central

PubMed publication ID

28 July 2017

release_ns4o3zd66zbjpmmlzfqnnq5ik4

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https://api.fatcat.wiki/v0/release/ns4o3zd66zbjpmmlzfqnnq5ik4

24 November 2022

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PMC publication ID

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Europe PubMed Central

PubMed publication ID

28 July 2017

PubMed publication ID

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Europe PubMed Central

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28 July 2017

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