NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure (Q33600780)

28 July 2017

NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure (English)

1 reference

nearest neighbour algorithm

28 July 2017

0 references

1 reference

1

Douglas H Turner

1 reference

28 July 2017

David H Mathews

2

1 reference

PubMed ID

19880381

28 July 2017

language of work or name

English

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publication date

30 October 2009

1 reference

28 July 2017

Nucleic Acids Research

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28 July 2017

38

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28 July 2017

D280-2

1 reference

28 July 2017

Database issue

1 reference

Predicting structures and stabilities for H-type pseudoknots with interhelix loops.

28 July 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808915

From knotted to nested RNA structures: a variety of computational methods for pseudoknot removal

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808915

A set of nearest neighbor parameters for predicting the enthalpy change of RNA secondary structure formation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808915

CONTRAfold: RNA secondary structure prediction without physics-based models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808915

Predicting RNA pseudoknot folding thermodynamics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808915

Sfold web server for statistical folding and rational design of nucleic acids

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808915

The thermodynamics of DNA structural motifs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808915

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808915

RNAsoft: A suite of RNA secondary structure prediction and design software tools

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808915

Mfold web server for nucleic acid folding and hybridization prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808915

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808915

Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808915

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808915

Improved Estimation of Secondary Structure in Ribonucleic Acids

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2808915

Fast folding and comparison of RNA secondary structures

21 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP892

Efficient parameter estimation for RNA secondary structure prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP892

A partition function algorithm for nucleic acid secondary structure including pseudoknots

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP892

An approximation of loop free energy values of RNA H-pseudoknots

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKP892

21 January 2018

Identifiers

DOI

10.1093/NAR/GKP892

1 reference

28 July 2017

journals/nar/TurnerM10

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

28 July 2017

1 reference

PubMed ID

19880381