Comparison of normalization methods for Illumina BeadChip HumanHT-12 v3. (Q33594867)

28 July 2017

Comparison of normalization methods for Illumina BeadChip HumanHT-12 v3. (English)

1 reference

28 July 2017

6

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28 July 2017

Wolfgang Huber

5

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Roland Eils

object named as

Roland Eils

7

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author name string

Ramona Schmid

1

1 reference

28 July 2017

Patrick Baum

2

1 reference

28 July 2017

Carina Ittrich

3

1 reference

28 July 2017

Katrin Fundel-Clemens

4

1 reference

28 July 2017

Andreas Weith

8

1 reference

28 July 2017

Detlev Mennerich

9

1 reference

28 July 2017

Karsten Quast

10

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28 July 2017

language of work or name

English

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publication date

2 June 2010

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28 July 2017

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28 July 2017

11

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28 July 2017

349

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28 July 2017

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/3091625

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

affy

object named as

affy

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2164-11-349

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cites work

Statistical methods of background correction for Illumina BeadArray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression

28 July 2018

1 reference

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Spike-in validation of an Illumina-specific variance-stabilizing transformation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

Consolidated strategy for the analysis of microarray spike-in data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

Enhanced identification and biological validation of differential gene expression via Illumina whole-genome expression arrays through the use of the model-based background correction methodology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

Statistical issues in the analysis of Illumina data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

Model-based variance-stabilizing transformation for Illumina microarray data.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

A novel, high-performance random array platform for quantitative gene expression profiling

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

Bioconductor: open software development for computational biology and bioinformatics

28 July 2018

1 reference

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affy--analysis of Affymetrix GeneChip data at the probe level

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

Statistical tests for differential expression in cDNA microarray experiments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

Expression monitoring by hybridization to high-density oligonucleotide arrays

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

Comparative analysis of methods for gene transcription profiling data derived from different microarray technologies in rat and mouse models of diabetes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

lumi: a pipeline for processing Illumina microarray

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

A benchmark for Affymetrix GeneChip expression measures.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

Variance stabilization applied to microarray data calibration and to the quantification of differential expression

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

A fluorometric assay for the quantification of RNA in solution with nanogram sensitivity.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3091625

Methods for evaluating gene expression from Affymetrix microarray datasets

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20525181

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12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-11-349

1 reference

Dimensions Publication ID

28 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-11-349

9 September 2019

1 reference

28 July 2017

1 reference