Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser (Q33575349)

28 July 2017

Analysis of gene evolution and metabolic pathways using the Candida Gene Order Browser (English)

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28 July 2017

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1

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28 July 2017

4

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28 July 2017

Kevin P Byrne

3

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author name string

Peadar O'Gaora

series ordinal

2

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PubMed ID

20459735

28 July 2017

language of work or name

English

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publication date

10 May 2010

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28 July 2017

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28 July 2017

11

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28 July 2017

290

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https://scigraph.springernature.com/pub.10.1186/1471-2164-11-290

28 July 2017

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cites work

Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans

1 reference

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Pichia stipitis genomics, transcriptomics, and gene clusters

14 July 2018

1 reference

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Evolution of pathogenicity and sexual reproduction in eight Candida genomes

14 July 2018

1 reference

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the hyphal-associated adhesin and invasin Als3 of Candida albicans mediates iron acquisition from host ferritin

14 July 2018

1 reference

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Evidence of recent interkingdom horizontal gene transfer between bacteria and Candida parapsilosis

14 July 2018

1 reference

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Duplicated paralogous genes subject to positive selection in the genome of Trypanosoma brucei

14 July 2018

1 reference

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Recurrent tandem gene duplication gave rise to functionally divergent genes in Drosophila

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

CandidaDB: a multi-genome database for Candida species and related Saccharomycotina

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Gene Ontology annotations at SGD: new data sources and annotation methods

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Discovering the secrets of the Candida albicans agglutinin-like sequence (ALS) gene family--a sticky pursuit

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Transcriptional rewiring of fungal galactose-metabolism circuitry

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

KAAS: an automatic genome annotation and pathway reconstruction server

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Comparative analysis indicates regulatory neofunctionalization of yeast duplicates

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Computational and experimental approaches double the number of known introns in the pathogenic yeast Candida albicans

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Epidemiology of invasive candidiasis: a persistent public health problem

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Sequence resources at the Candida Genome Database

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Peroxisomal fatty acid beta-oxidation is not essential for virulence of Candida albicans.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Candida albicans Ecm33p is important for normal cell wall architecture and interactions with host cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Visualizing syntenic relationships among the hemiascomycetes with the Yeast Gene Order Browser

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

A human-curated annotation of the Candida albicans genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Transcriptional response of Candida albicans upon internalization by macrophages

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Comparative genomics using Candida albicans DNA microarrays reveals absence and divergence of virulence-associated genes in Candida dubliniensis.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Nosocomial bloodstream infections in US hospitals: analysis of 24,179 cases from a prospective nationwide surveillance study

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Genome evolution in yeasts

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

The diploid genome sequence of Candida albicans

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

MUSCLE: multiple sequence alignment with high accuracy and high throughput

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

The enzymatic transformation of uridine diphosphate glucose into a galactose derivative

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Genomic gene clustering analysis of pathways in eukaryotes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Molecular evolution of eukaryotic genomes: hemiascomycetous yeast spliceosomal introns

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Ammonia pulses and metabolic oscillations guide yeast colony development.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Transcription profiling of Candida albicans cells undergoing the yeast-to-hyphal transition

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

A global analysis of Caenorhabditis elegans operons

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Attenuation of virulence and changes in morphology in Candida albicans by disruption of the N-acetylglucosamine catabolic pathway

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Gene duplication and the structure of eukaryotic genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

The inducible N-acetylglucosamine catabolic pathway gene cluster in Candida albicans: discrete N-acetylglucosamine-inducible factors interact at the promoter of NAG1

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Identification and characterization of five new subunits of TRAPP.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Characterization of the biotin biosynthesis pathway in Saccharomyces cerevisiae and evidence for a cluster containing BIO5, a novel gene involved in vitamer uptake

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Identification of peroxisomal acyl-CoA thioesterases in yeast and humans

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

KEGG: Kyoto Encyclopedia of Genes and Genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

PAML: a program package for phylogenetic analysis by maximum likelihood

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Molecular evidence for an ancient duplication of the entire yeast genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

The Candida albicans HYR1 gene, which is activated in response to hyphal development, belongs to a gene family encoding yeast cell wall proteins

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

A role for reverse transcripts in gene conversion

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Operons as a common form of chromosomal organization in C. elegans

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Review: the dominant flocculation genes of Saccharomyces cerevisiae constitute a new subtelomeric gene family

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

The mechanism of biotin-dependent enzymes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Temporal analysis of Candida albicans gene expression during biofilm development.

14 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-290

Genome-wide identification of fungal GPI proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-290

Identification and phylogenetic analysis of a glucose transporter gene family from the human pathogenic yeast Candida albicans

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-290

On the incidence of intron loss and gain in paralogous gene families.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-290

Birth of a metabolic gene cluster in yeast by adaptive gene relocation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-290

The reacquisition of biotin prototrophy in Saccharomyces cerevisiae involved horizontal gene transfer, gene duplication and gene clustering

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-290

Two membrane proteins located in the Nag regulon of Candida albicans confer multidrug resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-290

Characterization of the CaNAG3, CaNAG4, and CaNAG6 genes of the pathogenic fungus Candida albicans: possible involvement of these genes in the susceptibilities of cytotoxic agents

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-11-290

Non-universal usage of the leucine CUG codon and the molecular phylogeny of the genus Candida.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

Gene clusters and polycistronic transcription in eukaryotes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

[Biotin formation by the fungus Rhizopus delemar]

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2880306

31 October 2018

Identifiers

DOI

10.1186/1471-2164-11-290

1 reference

PubMed ID

20459735

Dimensions Publication ID

28 July 2017

1035032940

0 references

Fatcat ID

release_apdsaxmedzbvpa66dp6fxstg7i

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/apdsaxmedzbvpa66dp6fxstg7i

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

2880306

1 reference

28 July 2017

1 reference

PubMed ID

20459735